def main(argv):
# parse input arguments
parser = argparse.ArgumentParser()
parser.add_argument('-i', '--input',
help="the input YAML configuration file")
parser.add_argument('-s', '--serial',
help="run in serial mode",
action="store_true")
args = parser.parse_args()
batchStart = time.time()
Logger.logPrint("Starting batchprocess: "+args.input)
Logger.logPrint("Start time:"+timeStr(batchStart))
# load WormVideo to YAML configuration file
with open(args.input, 'r') as f:
wvs = wtc.loadWormVideos(f)
# run analysis on regions
if args.serial:
for wv in wvs:
wv.processRegions()
else:
wtp.batchProcessVideos(wvs)
batchStop = time.time()
Logger.logPrint("Start time:"+timeStr(batchStart))
Logger.logPrint("End time :"+timeStr(batchStop))
Logger.logPrint("Total time:"+timeStr(batchStop-batchStart))
return 'Success'
def main(argv):
# parse input arguments
parser = argparse.ArgumentParser()
parser.add_argument('-i',
'--input',
nargs='*',
help="the input pickled WormVideo object(s)")
args = parser.parse_args()
if 'input' in args:
inputFiles = parser.input
if len(inputFiles) == 1:
# check whether a directory was passed
path, name = os.path.split(inputFiles)
if name is None:
inputFiles = possibleWormVideoFiles(path)
else:
# grab all .dat files from folder
inputFiles = possibleWormVideoFiles()
wormVideos = []
for inputFile in inputFiles:
print 'Loading ' + inputFile
# load WormVideo object
try:
with open(parser.input, 'rb') as f:
wormVideos.append(cPickle.load(f))
except IOError as e:
s = "I/O error({0}) while unpickling WormVideo: {1}"
print s.format(e.errno, e.strerror)
raise
except Exception as e:
# can't do anything, just report error and exit gracefully
print('Failed to open or unpickle WormVideo object.' +
' Received error: ' + sys.exc_info()[0])
# run analysis on all worm videos
wtp.batchProcessVideos(wormVideos)
return 'Success'
def main(argv):
# parse input arguments
parser = argparse.ArgumentParser()
parser.add_argument('-i', '--input', nargs='*',
help="the input pickled WormVideo object(s)")
args = parser.parse_args()
if 'input' in args:
inputFiles = parser.input
if len(inputFiles) == 1:
# check whether a directory was passed
path, name = os.path.split(inputFiles)
if name is None:
inputFiles = possibleWormVideoFiles(path)
else:
# grab all .dat files from folder
inputFiles = possibleWormVideoFiles()
wormVideos = []
for inputFile in inputFiles:
print 'Loading ' + inputFile
# load WormVideo object
try:
with open(parser.input, 'rb') as f:
wormVideos.append(cPickle.load(f))
except IOError as e:
s = "I/O error({0}) while unpickling WormVideo: {1}"
print s.format(e.errno, e.strerror)
raise
except Exception as e:
# can't do anything, just report error and exit gracefully
print ('Failed to open or unpickle WormVideo object.' +
' Received error: ' + sys.exc_info()[0])
# run analysis on all worm videos
wtp.batchProcessVideos(wormVideos)
return 'Success'