def set_filtering(self):
'''Adds a line edit for a search query filter from the taxonomy'''
label = widgets.Label("Filter Query: ")
self.layout.addWidget(label, 2, 0, 1, 3)
storage = updating.Storage('taxonomy_filter')
searchquery = updating.LineEdit(
self, storage, tooltip="String filter for download queries.")
self.layout.addWidget(searchquery, 2, 3, 1, 7)
def __set_replace(self):
'''Set replace bar and QLineEdit form'''
label = widgets.Label("Replace With:")
self.layout.addWidget(label, 12, 0, 6, 2)
storage = updating.Storage('replace_form')
self.replaceform = updating.LineEdit(self,
storage,
tooltip="Search query.")
self.layout.addWidget(self.replaceform, 12, 2, 6, 4)
def __set_search(self):
'''Set search bar and QLineEdit form'''
label = widgets.Label("Search For:")
self.layout.addWidget(label, 0, 0, 6, 2)
storage = updating.Storage('search_form')
self.searchform = updating.LineEdit(self,
storage,
tooltip="Search query.")
self.layout.addWidget(self.searchform, 0, 2, 6, 4)
def set_taxon(self):
'''Adds a line edit for the taxonomy download'''
label = widgets.Label("Taxonomy: ")
self.layout.addWidget(label, 0, 0, 1, 3)
storage = updating.Storage('taxonomy')
taxonomy = updating.LineEdit(
self,
storage,
tooltip="Taxonomy ID for the UniProt KB database query.",
validator=QtGui.QIntValidator())
self.layout.addWidget(taxonomy, 0, 3, 1, 7)
def default_label(self):
'''Whether to add isotope labels to the crosslinker'''
hlayout = self.add_layout(QtGui.QHBoxLayout)
label = widgets.Label("Default Isotope Label")
hlayout.addWidget(label)
storage = updating.Storage('default_isotopic_label')
default = updating.LineEdit(self, storage,
tooltip="Default isotope label for the crosslinker (if no "
"isotope-labeled modifications exist on the peptide).")
hlayout.addWidget(default)
def image(self, regex=r"[0-9a-zA-Z]{2,4}"):
'''Sets the default image extension for XL Discoverer'''
label = widgets.Label("Image")
self.layout.addWidget(label, 3, 0)
storage = updating.Storage('image_extension', qt_config.TRANSITIONS)
validator = QtGui.QRegExpValidator(QtCore.QRegExp(regex))
image = updating.LineEdit(self, storage,
tooltip="Default extension for exported images.",
validator=validator,
width=75,
attr='extension')
self.layout.addWidget(image, 3, 1)
def document(self, regex=r"[0-9a-zA-Z]{2,4}"):
'''Sets the default document extension for XL Discoverer'''
label = widgets.Label("Document")
self.layout.addWidget(label, 2, 0)
storage = updating.Storage('document_extension', qt_config.TRANSITIONS)
validator = QtGui.QRegExpValidator(QtCore.QRegExp(regex))
document = updating.LineEdit(self, storage,
tooltip="Default extension for the transitions docuyment.",
validator=validator,
width=75,
attr='extension')
self.layout.addWidget(document, 2, 1)
def __set_loadfile(self):
'''Adds a QLineEdit to toggle the currently open database'''
layout = self.add_layout(QtGui.QHBoxLayout)
label = widgets.Label("Current Database ")
layout.addWidget(label)
storage = updating.Storage('current_proteins', paths.DYNAMIC)
self.database = updating.LineEdit(self, storage,
tooltip="Path to current database.")
self.database.value_about_to_change.connect(self.set_dbpath)
self.database.value_changed.connect(self.is_valid_file)
layout.addWidget(self.database)
item = dbwidgets.DatabaseItem("Get Database", self.database, self)
layout.addWidget(item)
def excel(self, regex=r"[0-9a-zA-Z]{2,4}"):
'''Sets the default excel extension for XL Discoverer'''
label = widgets.Label("OpenOffice")
self.layout.addWidget(label, 1, 0)
storage = updating.Storage('excel_extension', qt_config.TRANSITIONS)
validator = QtGui.QRegExpValidator(QtCore.QRegExp(regex))
excel = updating.LineEdit(self, storage,
tooltip="Default extension for OpenOffice spreadsheets.",
validator=validator,
width=75,
attr='extension')
self.layout.addWidget(excel, 1, 1)
# stretch factors
self.add_spacer(args=(1, 2))
self.layout.setColumnStretch(2, 1)