def test_outer_connect(self):
with connect() as login:
self.assertEqual(ls(self.test_proj, connection=login),
self._subjects)
# Check to see that the context hasn't been closed by the first
# ls call
self.assertEqual(ls(self.test_proj, connection=login),
self._subjects)
def test_outer_connect(self):
with connect() as mbi_xnat:
self.assertEqual(ls(self.test_proj, connection=mbi_xnat),
self._subjects)
# Check to see that the context hasn't been closed by the first
# ls call
self.assertEqual(ls(self.test_proj, connection=mbi_xnat),
self._subjects)
self.assertRaises(AttributeError,
ls,
self.test_proj,
connection=mbi_xnat)
def test_filtering(self):
self.assertEqual(
ls('{}_..._MR01'.format(self.test_proj),
datatype='session',
with_scans=['two'],
without_scans=['source']),
['{}_{:03}_MR01'.format(self.test_proj, i) for i in (3, 4, 5)])
def test_scan_ls(self):
self.assertEqual(ls('{}_001_MR01'.format(self.test_proj)),
['source', 'three', 'two'])
def test_list_subject(self):
self.assertEqual(ls('{}_001'.format(self.test_proj)),
['{}_001_MR01'.format(self.test_proj)])
def test_ls(self):
self.assertEqual(ls(self.test_proj), self._subjects)
from xnatutils import get_from_xml, put, get, ls
# get_from_xml('./test/clia6071-20200709_125713.xml', '/Users/tclose/Desktop/temp',
# server='xnat.sydney.edu.au')
# put('TEST001_TESTMISC_MR01', 'test_file',
# '/Users/tclose/Desktop/screen-shot.png', create_session=True,
# overwrite=True)
# get('S01_MR1', '/Users/tclose/Desktop/temp2', project_id='PIPELINETEST',
# server='dev.xnat.sydney.edu.au')
print(
ls(subject_id='S01',
project_id='PIPELINETEST',
server='dev.xnat.sydney.edu.au'))