# If we are only claculation translation, we swich on translation calculation
if o.onlyTrans and not o.translation:
o.translation = True
# Split the comma seperated list into a list of integers
if args['removeModels'] != "":
o.remove = list(map(int, args['removeModels'].split(',')))
else:
o.remove = []
o.fragSize = fragSize
o.verbose = args['verbose']
o.keepTemp = args['keepTempFiles']
o.sdfPartial = sdf_partial_fragments
if not o.verbose:
o.verbose = 0
# Checking paths
if o.inData == "":
checkPathExists(o.exePath)
checkPathExists(args['in'])
if not o.skipREMO:
checkPathExists(path.join(o.REMOPath, 'REMO.pl'))
checkPathExists(o.tmpPath)
else:
checkPathExists(o.inData)
