def main():
# Reading Harts Essential Genes
if not os.path.isfile('./pickled/essential_nonessential_genes.p'):
rd.ReadEssential_NonEssential_Genes()
print('Finished Reading Harts Essentiality Genes')
essential_genes, nonessential_genes = pickle.load(
open("./pickled/essential_nonessential_genes.p", "rb"))
if not os.path.isfile('./input/GBM-lib1_l2fc.csv'):
rd.ProcessTKODataForDESEQ()
# RunAlgorithms('Simulation', 'All')
# rd.ProcessTKODataForDESEQ()
with open(ff_name, "a") as ff:
print('#################################', file=ff)
filenames = [
'HCT116_1-lib1', 'HCT116_2-lib1', 'DLD1-lib1', 'HeLa-lib1',
'RPE1-lib1', 'GBM-lib1'
]
# RunAlgorithms(filenames[1], 'All')
for i in range(len(filenames)):
with open(ff_name, "a") as ff:
print(filenames[i], file=ff)
RunAlgorithms(filenames[i], 'All')
return ()
