def unitTestInitialState(self):
"""
Check the initialization of the share:
"""
EDAssert.equal(False, EDShare.isInitialized(), "Check that EDShare is uninitialized")
EDShare.initialize(os.path.join(tempfile.gettempdir(), "edna-%s" % os.environ["USER"]))
EDShare["test1"] = range(10)
EDVerbose.screen("Backend used is %s" % EDShare.backend)
EDAssert.equal(1, len(EDShare.items()))
EDAssert.equal(True, "test1" in EDShare, "list is actually present")
for i, j in zip(range(10), EDShare["test1"]):
EDAssert.equal(i, j, "elements are the same")
EDShare.close()
EDShare.initialize(os.path.join(tempfile.gettempdir(), "edna-%s" % os.environ["USER"]))
EDAssert.equal(True, "test1" in EDShare, "list is still present")
for i, j in zip(range(10), EDShare["test1"]):
EDAssert.equal(i, j, "elements are still the same")
filename = EDShare.filename
EDShare.close(remove=True)
EDAssert.equal(False, os.path.isfile(filename), "dump-file has been removed")
def unitTestInitialState(self):
"""
Check the initialization of the share:
"""
EDAssert.equal(False, EDShare.isInitialized(),
"Check that EDShare is uninitialized")
strEdnaUserTempFolder = EDUtilsPath.getEdnaUserTempFolder()
EDShare.initialize(strEdnaUserTempFolder)
EDShare["test1"] = range(10)
EDVerbose.screen("Backend used is %s" % EDShare.backend)
EDAssert.equal(1, len(EDShare.items()))
EDAssert.equal(True, "test1" in EDShare, "list is actually present")
for i, j in zip(range(10), EDShare["test1"]):
EDAssert.equal(i, j, "elements are the same")
EDShare.close()
EDShare.initialize(strEdnaUserTempFolder)
EDAssert.equal(True, "test1" in EDShare, "list is still present")
for i, j in zip(range(10), EDShare["test1"]):
EDAssert.equal(i, j, "elements are still the same")
filename = EDShare.filename
EDShare.close(remove=True)
EDAssert.equal(False, os.path.isfile(filename),
"dump-file has been removed")
def cleanUp(cls):
"""
Clean up of the dictionary containing images: Left for compatibility reasons
"""
EDShare.flush()
architecture = EDUtilsPlatform.architecture
fabioPath = os.path.join(os.environ["EDNA_HOME"], "libraries", "FabIO-0.0.7",
architecture)
imagingPath = os.path.join(os.environ["EDNA_HOME"], "libraries",
"20091115-PIL-1.1.7", architecture)
numpyPath = os.path.join(os.environ["EDNA_HOME"], "libraries",
"20090405-Numpy-1.3", architecture)
EDFactoryPluginStatic.preImport("Image", imagingPath)
numpy = EDFactoryPluginStatic.preImport("numpy", numpyPath)
fabio = EDFactoryPluginStatic.preImport("fabio", fabioPath)
if "USER" not in os.environ:
os.environ["USER"] = "******"
destDir = os.path.join(tempfile.gettempdir(), "edna-%s" % os.environ["USER"])
EDShare.initialize(destDir)
class EDTestCasePluginExecuteExecMatrixInvertv2_0_path(EDTestCasePluginExecute
):
"""
Those are all execution tests for the EDNA Exec plugin MatrixInvertv2_0 (Using shared arrays via HDF5)
"""
def __init__(self, _strTestName=None):
"""
"""
EDTestCasePluginExecute.__init__(self, "EDPluginExecMatrixInvertv2_0")
# self.setConfigurationFile(os.path.join(self.getPluginTestsDataHome(),
# "XSConfiguration_MatrixInvert.xml"))
self.setDataInputFile(os.path.join(self.getPluginTestsDataHome(), \
"XSDataInputMatrixInvertv2_path.xml"))
from EDPluginControlFullFieldXASv1_0 import EDPluginControlFullFieldXASv1_0
from EDPluginHDF5StackImagesv10 import EDPluginHDF5StackImagesv10
from XSDataFullFieldXAS import MeasureOffset, XSDataInputAlignStack, XSDataInputFullFieldXAS
from XSDataCommon import (
XSDataTime,
XSDataFile,
XSDataImageExt,
XSDataString,
XSDataInteger,
XSDataBoolean,
XSDataDouble,
)
if socket.gethostname() == "lintaillefer":
EDShare.initialize("/mnt/data/EDShare")
if socket.gethostname() == "tabor":
EDShare.initialize("/mnt/EDShare")
else:
try:
dirnames = [i for i in os.listdir("/buffer") if i.startswith(socket.gethostname())]
except OSError:
dirnames = []
if dirnames != []:
EDShare.initialize(os.path.join("/buffer", dirnames[0]))
EDNAPluginName = "EDPluginControlFullFieldXASv1_0"
class FullFieldXas(object):
def cleanUp(cls):
"""
Clean up of the dictionary containing images: Left for compatibility reasons
"""
EDShare.flush()
h5pyPath = os.path.join(os.environ["EDNA_HOME"], "libraries", "H5Py-1.3.0", EDUtilsPlatform.architecture)
h5py = EDFactoryPluginStatic.preImport("h5py", h5pyPath, _strMethodVersion="version.api_version", _strForceVersion="1.8")
from EDShare import EDShare
EDFactoryPluginStatic.loadModule('EDPluginHDF5StackImagesv10')
EDFactoryPluginStatic.loadModule('EDPluginControlAlignStackv1_0')
EDFactoryPluginStatic.loadModule("EDPluginAccumulatorv1_0")
from EDPluginAccumulatorv1_0 import EDPluginAccumulatorv1_0
from EDPluginControlAlignStackv1_0 import EDPluginControlAlignStackv1_0
from EDPluginControlFullFieldXASv1_0 import EDPluginControlFullFieldXASv1_0
from EDPluginHDF5StackImagesv10 import EDPluginHDF5StackImagesv10
from XSDataFullFieldXAS import MeasureOffset, XSDataInputAlignStack, XSDataInputFullFieldXAS
from XSDataCommon import XSDataTime, XSDataFile, XSDataImageExt, XSDataString, XSDataInteger, XSDataBoolean, XSDataDouble
if socket.gethostname() == 'lintaillefer':
EDShare.initialize("/mnt/data/EDShare")
if socket.gethostname() == 'tabor':
EDShare.initialize("/mnt/EDShare")
else:
try:
dirnames = [i for i in os.listdir("/buffer") if i.startswith(socket.gethostname())]
except OSError:
dirnames = []
if dirnames != []:
EDShare.initialize(os.path.join("/buffer", dirnames[0]))
EDNAPluginName = "EDPluginControlFullFieldXASv1_0"
class FullFieldXas(object):
"""
EDFactoryPluginStatic.loadModule("EDInstallPILv1_1_7")
EDFactoryPluginStatic.loadModule("EDInstallFabio_v0_0_7")
architecture = EDUtilsPlatform.architecture
fabioPath = os.path.join(os.environ["EDNA_HOME"], "libraries", "FabIO-0.0.7", architecture)
imagingPath = os.path.join(os.environ["EDNA_HOME"], "libraries", "20091115-PIL-1.1.7", architecture)
numpyPath = os.path.join(os.environ["EDNA_HOME"], "libraries", "20090405-Numpy-1.3", architecture)
EDFactoryPluginStatic.preImport("Image", imagingPath)
numpy = EDFactoryPluginStatic.preImport("numpy", numpyPath)
fabio = EDFactoryPluginStatic.preImport("fabio", fabioPath)
if "USER" not in os.environ:
os.environ["USER"] = "******"
destDir = os.path.join(tempfile.gettempdir(), "edna-%s" % os.environ["USER"])
EDShare.initialize(destDir)
class EDTestCasePluginExecuteExecMatrixInvertv2_0_path(EDTestCasePluginExecute):
"""
Those are all execution tests for the EDNA Exec plugin MatrixInvertv2_0 (Using shared arrays via HDF5)
"""
def __init__(self, _strTestName=None):
"""
"""
EDTestCasePluginExecute.__init__(self, "EDPluginExecMatrixInvertv2_0")
# self.setConfigurationFile(os.path.join(self.getPluginTestsDataHome(),
# "XSConfiguration_MatrixInvert.xml"))
self.setDataInputFile(os.path.join(self.getPluginTestsDataHome(), "XSDataInputMatrixInvertv2_path.xml"))
self.setReferenceDataOutputFile(
