def unitTestInitialState(self):
"""
Check the initialization of the share:
"""
EDAssert.equal(False, EDShare.isInitialized(), "Check that EDShare is uninitialized")
EDShare.initialize(os.path.join(tempfile.gettempdir(), "edna-%s" % os.environ["USER"]))
EDShare["test1"] = range(10)
EDVerbose.screen("Backend used is %s" % EDShare.backend)
EDAssert.equal(1, len(EDShare.items()))
EDAssert.equal(True, "test1" in EDShare, "list is actually present")
for i, j in zip(range(10), EDShare["test1"]):
EDAssert.equal(i, j, "elements are the same")
EDShare.close()
EDShare.initialize(os.path.join(tempfile.gettempdir(), "edna-%s" % os.environ["USER"]))
EDAssert.equal(True, "test1" in EDShare, "list is still present")
for i, j in zip(range(10), EDShare["test1"]):
EDAssert.equal(i, j, "elements are still the same")
filename = EDShare.filename
EDShare.close(remove=True)
EDAssert.equal(False, os.path.isfile(filename), "dump-file has been removed")
def unitTestInitialState(self):
"""
Check the initialization of the share:
"""
EDAssert.equal(False, EDShare.isInitialized(),
"Check that EDShare is uninitialized")
strEdnaUserTempFolder = EDUtilsPath.getEdnaUserTempFolder()
EDShare.initialize(strEdnaUserTempFolder)
EDShare["test1"] = range(10)
EDVerbose.screen("Backend used is %s" % EDShare.backend)
EDAssert.equal(1, len(EDShare.items()))
EDAssert.equal(True, "test1" in EDShare, "list is actually present")
for i, j in zip(range(10), EDShare["test1"]):
EDAssert.equal(i, j, "elements are the same")
EDShare.close()
EDShare.initialize(strEdnaUserTempFolder)
EDAssert.equal(True, "test1" in EDShare, "list is still present")
for i, j in zip(range(10), EDShare["test1"]):
EDAssert.equal(i, j, "elements are still the same")
filename = EDShare.filename
EDShare.close(remove=True)
EDAssert.equal(False, os.path.isfile(filename),
"dump-file has been removed")
else:
ffx = FullFieldXas()
if os.path.isfile(".XSDataInputFullFieldXAS.xml"):
ffx.load(".XSDataInputFullFieldXAS.xml")
ffx.dontAlign = dontAlign
if dontAlign:
print ("*" * 80)
print ("*" + "Skipping image alignement part".center(78) + "*")
print ("*" * 80)
ffx.setup(_listInput=paths, _mode=mode)
if not isinstance(ffx.reference, int):
ffx.uploadReferenceFrame(ffx.reference)
ffx.save(".XSDataInputFullFieldXAS.xml")
ffx.dump("analysis-%s.json" % time.strftime("%Y%m%d-%Hh%Mm%Ss"))
edna = EDParallelExecute(
ffx.pluginName, ffx.makeXML, _functXMLerr=ffx.error, _bVerbose=True, _bDebug=debug, _iNbThreads=iNbCPU
)
edna.runEDNA(ffx.listInput, ffx.strMode, ffx.bNewerOnly)
EDVerbose.WARNING("Back to main !")
EDJob.synchronizeAll()
ffx.updateAttrRefImage()
EDPluginControlAlignStackv1_0.showData()
if keepShare:
EDShare.close()
elif (ffx.getNrErrors() == 0) and (not EDVerbose.isVerboseDebug()):
EDVerbose.WARNING("All processing finished successfully: Remove EDShare's big HDF5 file")
EDShare.close(remove=True)
else:
EDShare.close()
if replay:
ffx = FullFieldXas.replay_from(replay)
else:
ffx = FullFieldXas()
if os.path.isfile(".XSDataInputFullFieldXAS.xml"):
ffx.load(".XSDataInputFullFieldXAS.xml")
ffx.dontAlign = dontAlign
if dontAlign:
print("*"*80)
print("*" + "Skipping image alignement part".center(78) + "*")
print("*"*80)
ffx.setup(_listInput=paths, _mode=mode)
if not isinstance(ffx.reference, int):
ffx.uploadReferenceFrame(ffx.reference)
ffx.save(".XSDataInputFullFieldXAS.xml")
ffx.dump("analysis-%s.json" % time.strftime("%Y%m%d-%Hh%Mm%Ss"))
edna = EDParallelExecute(ffx.pluginName, ffx.makeXML, _functXMLerr=ffx.error, _bVerbose=True, _bDebug=debug, _iNbThreads=iNbCPU)
edna.runEDNA(ffx.listInput, ffx.strMode , ffx.bNewerOnly)
EDVerbose.WARNING("Back to main !")
EDJob.synchronizeAll()
ffx.updateAttrRefImage()
EDPluginControlAlignStackv1_0.showData()
if keepShare:
EDShare.close()
elif (ffx.getNrErrors() == 0) and (not EDVerbose.isVerboseDebug()):
EDVerbose.WARNING("All processing finished successfully: Remove EDShare's big HDF5 file")
EDShare.close(remove=True)
else:
EDShare.close()
