# -*- coding: utf-8 -*-
"""
Neo segment viewer
-----------------------------------------------
Simple code to open neo.Segment viewer and all related object.
"""
import sys
sys.path.append('..')
if __name__ == '__main__':
from OpenElectrophy.gui.viewers import SegmentViewer
from OpenElectrophy import TryItIO
from PyQt4.QtGui import QApplication
app = QApplication([])
bl = TryItIO().read(nb_segment=1, duration=100)[0]
w = SegmentViewer(segment=bl.segments[0])
w.show()
app.exec_()
def test2():
# record on trigger
streamhandler = StreamHandler()
dev0 = FakeMultiSignals(streamhandler = streamhandler)
dev0.configure(
nb_channel = 16,
sampling_rate =1000.,
buffer_length = 64,
packet_size = 10,
last_channel_is_trig = True,
)
dev1 = FakeDigital(streamhandler = streamhandler)
dev1.configure(
nb_channel = 10,
sampling_rate =1000.,
buffer_length = 10.,
packet_size = 128,
)
devs = [dev0, dev1]
#~ devs = [dev0]
for dev in devs:
dev.initialize()
dirname_base = os.path.join(user.home, 'test_pyacq_recording')
if not os.path.exists(dirname_base):
os.mkdir(dirname_base)
dirname = os.path.join(dirname_base, 'rec {}'.format(datetime.datetime.now()))
if not os.path.exists(dirname):
os.mkdir(dirname)
global is_started
is_started = 0
def start_rec(pos):
global is_started
is_started +=1
if is_started!=5:
return
print 'start_rec', pos, is_started
streams = [dev.streams[0] for dev in devs]
bound_indexes = {dev0.streams[0] : (pos-1000, pos+1000),
dev1.streams[0] : (pos-1000, pos+1000),
}
rec = RawDataRecording(streams, dirname, bound_indexes = bound_indexes)
rec.start()
#~ trigger.start()
for dev in devs:
dev.start()
trigger = AnalogTrigger(stream = dev0.streams[0],
threshold = 0.25,
front = '+',
channel = dev0.nb_channel-1,
#~ debounce_mode = 'no-debounce',
#~ debounce_mode = 'after-stable',
debounce_mode = 'before-stable',
debounce_time = 0.05,
callbacks = [ start_rec, ]
)
time.sleep(5.)
#~ rec.stop()
# Stope and release the device
for dev in devs:
dev.stop()
dev.close()
# Read the files
reader = neo.RawBinarySignalIO(filename = os.path.join(dirname, 'fake 16 analog input.raw'))
seg = reader.read_segment(sampling_rate = 1.*pq.kHz,
t_start = 0.*pq.s,
unit = pq.V,
nbchannel = 16,
dtype = np.float32,
)
app = QtGui.QApplication([])
viewer = SegmentViewer(segment = seg)
#~ viewer = SignalViewer(analogsignals = seg.analogsignals, with_time_seeker = True)
viewer.show()
print seg.analogsignals[0].shape
sig = seg.analogsignals[-1].magnitude
print np.where((sig[:-1]<.25)&(sig[1:]>=.25))
analogsignals2 = [ ]
arr = np.memmap(filename = os.path.join(dirname, u'fake 10 digital input.raw'), mode = 'r', dtype = np.uint8)
arr = arr.reshape(-1, 2)
print arr.shape
for chan in range(10):
b = chan//8
mask = 1<<(chan%8)
sig = (arr[:,b]&mask>0).astype(float)
analogsignals2.append(neo.AnalogSignal(sig*pq.V, t_start = 0*pq.s, sampling_rate = 1*pq.kHz))
viewer2 = SignalViewer(analogsignals = analogsignals2, with_time_seeker = True)
viewer2.show()
app.exec_()
# -*- coding: utf-8 -*-
"""
Neo segment viewer
-----------------------------------------------
Simple code to open neo.Segment viewer and all related object.
"""
import sys
sys.path.append('..')
if __name__== '__main__':
from OpenElectrophy.gui.viewers import SegmentViewer
from OpenElectrophy import TryItIO
from PyQt4.QtGui import QApplication
app = QApplication([ ])
bl = TryItIO().read(nb_segment=1, duration = 100)[0]
w = SegmentViewer(segment = bl.segments[0])
w.show()
app.exec_()
def test1():
streamhandler = StreamHandler()
dev0 = FakeMultiSignals(streamhandler = streamhandler)
dev0.configure( #name = 'Analog fake 0',
nb_channel = 16,
sampling_rate =1000.,
buffer_length = 64,
packet_size = 10,
)
dev1 = FakeDigital(streamhandler = streamhandler)
dev1.configure( #name = u'Digital fake 1 éà',
nb_channel = 10,
sampling_rate =1000.,
buffer_length = 10.,
packet_size = 128,
)
devs = [dev0, dev1]
for dev in devs:
dev.initialize()
streams = [dev.streams[0] for dev in devs]
dirname_base = os.path.join(user.home, 'test_pyacq_recording')
if not os.path.exists(dirname_base):
os.mkdir(dirname_base)
dirname = os.path.join(dirname_base, 'rec {}'.format(datetime.datetime.now()))
if not os.path.exists(dirname):
os.mkdir(dirname)
rec = RawDataRecording(streams, dirname)
rec.start()
for dev in devs:
dev.start()
time.sleep(10.)
rec.stop()
# Stope and release the device
for dev in devs:
dev.stop()
dev.close()
# Read the files
reader = neo.RawBinarySignalIO(filename = os.path.join(dirname, 'fake 16 analog input.raw'))
seg = reader.read_segment(sampling_rate = 1.*pq.kHz,
t_start = 0.*pq.s,
unit = pq.V,
nbchannel = 16,
dtype = np.float32,
)
app = QtGui.QApplication([])
viewer = SegmentViewer(segment = seg)
#~ viewer = SignalViewer(analogsignals = seg.analogsignals, with_time_seeker = True)
viewer.show()
print seg.analogsignals[0].shape
analogsignals2 = [ ]
arr = np.memmap(filename = os.path.join(dirname, u'fake 10 digital input.raw'), mode = 'r', dtype = np.uint8)
arr = arr.reshape(-1, 2)
print arr.shape
for chan in range(10):
b = chan//8
mask = 1<<(chan%8)
sig = (arr[:,b]&mask>0).astype(float)
analogsignals2.append(neo.AnalogSignal(sig*pq.V, t_start = 0*pq.s, sampling_rate = 1*pq.kHz))
viewer2 = SignalViewer(analogsignals = analogsignals2, with_time_seeker = True)
viewer2.show()
app.exec_()