def __init__(self, _simulator, model, probStem=0.00, probBasal=0.00, probIntermediate=0.00, probUmbrella=0.00, _frequency=1):
ModuroSteppable.__init__(self, _simulator, model, _frequency)
self.mutationMCS = self.execConfig.calcMCSfromDays(1) # every day.
self.mutationMCS = self.execConfig.calcMCSfromDays(1)
self.probStem = probStem
self.probBasal = probBasal
self.probIntermediate = probIntermediate
self.probUmbrella = probUmbrella
def __init__(self, simulator, model, _frequency=1):
ModuroSteppable.__init__(self, simulator, model, _frequency)
self.idealUrotheliumVol = self.execConfig.xDimension * 85 * self.execConfig.zDimension
self.idealBasalStemCellsVol = 0.1 * self.idealUrotheliumVol
self.idealIntermediateCellsVol = 0.67 * self.idealUrotheliumVol
self.idealUmbrellaCellsVol = 0.23 * self.idealUrotheliumVol
self.latticeSize = self.execConfig.xDimension * self.execConfig.yDimension * self.execConfig.zDimension
self.optimum = []
def __init__(self, simulator, model, colonyTagInDays=1, _frequency=1):
'''
:param simulator:
:param model:
:param colonyTagInDays: Time point when cells are labelled with a colony id.
:param _frequency:
:return:
'''
ModuroSteppable.__init__(self, simulator, model, _frequency)
self.scalarCLField = self.createScalarFieldCellLevelPy("ColonyField")
self.colonyTagInDays = colonyTagInDays
self.colonyTagInMCS = self.model.execConfig.calcMCSfromDays(colonyTagInDays)
def __init__(self, _simulator, model, _frequency=1):
ModuroSteppable.__init__(self, _simulator, model,_frequency)
def __init__(self, simulator, model, fileName, _frequency=1):
ModuroSteppable.__init__(self, simulator, model, _frequency)
self.latticeSize = self.execConfig.latticeSizeInVoxel
self._fileName = fileName
def __init__(self, _simulator, model, prop=0.02, _frequency=1):
ModuroSteppable.__init__(self, _simulator, model, _frequency)
self.urinationMCS = self.execConfig.calcMCSfromDays(0.25) # every six hours.
self.deathIntervalMCS = self.execConfig.calcMCSfromDays(1) # one day.
self.prob = prop
def __init__(self, simulator, model, contactInhibitedFactor=50.0,_frequency=1):
ModuroSteppable.__init__(self, simulator, model, _frequency)
self.contactInhibitedFactor = contactInhibitedFactor