def __init__(self, _simulator, model, probStem=0.00, probBasal=0.00, probIntermediate=0.00, probUmbrella=0.00, _frequency=1): ModuroSteppable.__init__(self, _simulator, model, _frequency) self.mutationMCS = self.execConfig.calcMCSfromDays(1) # every day. self.mutationMCS = self.execConfig.calcMCSfromDays(1) self.probStem = probStem self.probBasal = probBasal self.probIntermediate = probIntermediate self.probUmbrella = probUmbrella
def __init__(self, simulator, model, _frequency=1): ModuroSteppable.__init__(self, simulator, model, _frequency) self.idealUrotheliumVol = self.execConfig.xDimension * 85 * self.execConfig.zDimension self.idealBasalStemCellsVol = 0.1 * self.idealUrotheliumVol self.idealIntermediateCellsVol = 0.67 * self.idealUrotheliumVol self.idealUmbrellaCellsVol = 0.23 * self.idealUrotheliumVol self.latticeSize = self.execConfig.xDimension * self.execConfig.yDimension * self.execConfig.zDimension self.optimum = []
def __init__(self, simulator, model, colonyTagInDays=1, _frequency=1): ''' :param simulator: :param model: :param colonyTagInDays: Time point when cells are labelled with a colony id. :param _frequency: :return: ''' ModuroSteppable.__init__(self, simulator, model, _frequency) self.scalarCLField = self.createScalarFieldCellLevelPy("ColonyField") self.colonyTagInDays = colonyTagInDays self.colonyTagInMCS = self.model.execConfig.calcMCSfromDays(colonyTagInDays)
def __init__(self, _simulator, model, _frequency=1): ModuroSteppable.__init__(self, _simulator, model,_frequency)
def __init__(self, simulator, model, fileName, _frequency=1): ModuroSteppable.__init__(self, simulator, model, _frequency) self.latticeSize = self.execConfig.latticeSizeInVoxel self._fileName = fileName
def __init__(self, _simulator, model, prop=0.02, _frequency=1): ModuroSteppable.__init__(self, _simulator, model, _frequency) self.urinationMCS = self.execConfig.calcMCSfromDays(0.25) # every six hours. self.deathIntervalMCS = self.execConfig.calcMCSfromDays(1) # one day. self.prob = prop
def __init__(self, simulator, model, contactInhibitedFactor=50.0,_frequency=1): ModuroSteppable.__init__(self, simulator, model, _frequency) self.contactInhibitedFactor = contactInhibitedFactor