def test_create_cache(self): with TempDirectory() as temp: directory = create_ziphmm_directory(temp.path) xdir = ZipDirectory(directory) self.assertFalse(xdir.is_cached(3)) xdir.create_cache(3) self.assertTrue(xdir.is_cached(3))
def test_init_without_data(self): with TempDirectory() as temp: directory = create_ziphmm_directory(temp.path) data_structure_path = os.path.join(directory, 'data_structure') os.remove(data_structure_path) xdir = ZipDirectory(directory) self.assertEqual(directory, xdir.path)
def test_init_without_data(self): with TempDirectory() as temp: directory = create_ziphmm_directory(temp.path) data_structure_path = os.path.join(directory, 'data_structure') os.remove(data_structure_path) xdir = ZipDirectory(directory) self.assertEqual(directory, xdir.path)
def test_create_cache(self): with TempDirectory() as temp: directory = create_ziphmm_directory(temp.path) xdir = ZipDirectory(directory) self.assertFalse(xdir.is_cached(3)) xdir.create_cache(3) self.assertTrue(xdir.is_cached(3))
def test_clear_cache(self): with TempDirectory() as temp: directory = create_ziphmm_directory(temp.path) xdir = ZipDirectory(directory) self.assertTrue(os.path.isfile( os.path.join(directory, 'data_structure'))) xdir.clear_cache() self.assertFalse(os.path.isfile( os.path.join(directory, 'data_structure')))
def test_clear_cache(self): with TempDirectory() as temp: directory = create_ziphmm_directory(temp.path) xdir = ZipDirectory(directory) self.assertTrue( os.path.isfile(os.path.join(directory, 'data_structure'))) xdir.clear_cache() self.assertFalse( os.path.isfile(os.path.join(directory, 'data_structure')))
def test_load(self): with TempDirectory() as temp: directory = create_ziphmm_directory(temp.path) xdir = ZipDirectory(directory) self.assertTrue(xdir.is_cached(2)) xseq2 = xdir.load(2) self.assertEqual(2, xseq2.state_count) self.assertTrue(xdir.is_cached(2)) self.assertFalse(xdir.is_cached(3)) xseq3 = xdir.load(3) self.assertEqual(3, xseq3.state_count) self.assertTrue(xdir.is_cached(3)) self.assertFalse(xdir.is_cached(4)) xseq4 = xdir.load(4) self.assertEqual(4, xseq4.state_count) self.assertTrue(xdir.is_cached(4))
def test_load(self): with TempDirectory() as temp: directory = create_ziphmm_directory(temp.path) xdir = ZipDirectory(directory) self.assertTrue(xdir.is_cached(2)) xseq2 = xdir.load(2) self.assertEqual(2, xseq2.state_count) self.assertTrue(xdir.is_cached(2)) self.assertFalse(xdir.is_cached(3)) xseq3 = xdir.load(3) self.assertEqual(3, xseq3.state_count) self.assertTrue(xdir.is_cached(3)) self.assertFalse(xdir.is_cached(4)) xseq4 = xdir.load(4) self.assertEqual(4, xseq4.state_count) self.assertTrue(xdir.is_cached(4))
def test_init_with_data(self): with TempDirectory() as temp: directory = create_ziphmm_directory(temp.path) xdir = ZipDirectory(directory) self.assertEqual(directory, xdir.path)
def test_has_original_sequence(self): with TempDirectory() as temp: self.assertFalse(ZipDirectory.has_original_sequence(temp.path)) directory = create_ziphmm_directory(temp.path) self.assertTrue(ZipDirectory.has_original_sequence(directory))
def test_init_with_data(self): with TempDirectory() as temp: directory = create_ziphmm_directory(temp.path) xdir = ZipDirectory(directory) self.assertEqual(directory, xdir.path)
def test_has_original_sequence(self): with TempDirectory() as temp: self.assertFalse(ZipDirectory.has_original_sequence(temp.path)) directory = create_ziphmm_directory(temp.path) self.assertTrue(ZipDirectory.has_original_sequence(directory))