def test_create_cache(self):
with TempDirectory() as temp:
directory = create_ziphmm_directory(temp.path)
xdir = ZipDirectory(directory)
self.assertFalse(xdir.is_cached(3))
xdir.create_cache(3)
self.assertTrue(xdir.is_cached(3))
def test_init_without_data(self):
with TempDirectory() as temp:
directory = create_ziphmm_directory(temp.path)
data_structure_path = os.path.join(directory, 'data_structure')
os.remove(data_structure_path)
xdir = ZipDirectory(directory)
self.assertEqual(directory, xdir.path)
def test_init_without_data(self):
with TempDirectory() as temp:
directory = create_ziphmm_directory(temp.path)
data_structure_path = os.path.join(directory, 'data_structure')
os.remove(data_structure_path)
xdir = ZipDirectory(directory)
self.assertEqual(directory, xdir.path)
def test_create_cache(self):
with TempDirectory() as temp:
directory = create_ziphmm_directory(temp.path)
xdir = ZipDirectory(directory)
self.assertFalse(xdir.is_cached(3))
xdir.create_cache(3)
self.assertTrue(xdir.is_cached(3))
def test_clear_cache(self):
with TempDirectory() as temp:
directory = create_ziphmm_directory(temp.path)
xdir = ZipDirectory(directory)
self.assertTrue(os.path.isfile(
os.path.join(directory, 'data_structure')))
xdir.clear_cache()
self.assertFalse(os.path.isfile(
os.path.join(directory, 'data_structure')))
def test_clear_cache(self):
with TempDirectory() as temp:
directory = create_ziphmm_directory(temp.path)
xdir = ZipDirectory(directory)
self.assertTrue(
os.path.isfile(os.path.join(directory, 'data_structure')))
xdir.clear_cache()
self.assertFalse(
os.path.isfile(os.path.join(directory, 'data_structure')))
def test_load(self):
with TempDirectory() as temp:
directory = create_ziphmm_directory(temp.path)
xdir = ZipDirectory(directory)
self.assertTrue(xdir.is_cached(2))
xseq2 = xdir.load(2)
self.assertEqual(2, xseq2.state_count)
self.assertTrue(xdir.is_cached(2))
self.assertFalse(xdir.is_cached(3))
xseq3 = xdir.load(3)
self.assertEqual(3, xseq3.state_count)
self.assertTrue(xdir.is_cached(3))
self.assertFalse(xdir.is_cached(4))
xseq4 = xdir.load(4)
self.assertEqual(4, xseq4.state_count)
self.assertTrue(xdir.is_cached(4))
def test_load(self):
with TempDirectory() as temp:
directory = create_ziphmm_directory(temp.path)
xdir = ZipDirectory(directory)
self.assertTrue(xdir.is_cached(2))
xseq2 = xdir.load(2)
self.assertEqual(2, xseq2.state_count)
self.assertTrue(xdir.is_cached(2))
self.assertFalse(xdir.is_cached(3))
xseq3 = xdir.load(3)
self.assertEqual(3, xseq3.state_count)
self.assertTrue(xdir.is_cached(3))
self.assertFalse(xdir.is_cached(4))
xseq4 = xdir.load(4)
self.assertEqual(4, xseq4.state_count)
self.assertTrue(xdir.is_cached(4))
def test_init_with_data(self):
with TempDirectory() as temp:
directory = create_ziphmm_directory(temp.path)
xdir = ZipDirectory(directory)
self.assertEqual(directory, xdir.path)
def test_has_original_sequence(self):
with TempDirectory() as temp:
self.assertFalse(ZipDirectory.has_original_sequence(temp.path))
directory = create_ziphmm_directory(temp.path)
self.assertTrue(ZipDirectory.has_original_sequence(directory))
def test_init_with_data(self):
with TempDirectory() as temp:
directory = create_ziphmm_directory(temp.path)
xdir = ZipDirectory(directory)
self.assertEqual(directory, xdir.path)
def test_has_original_sequence(self):
with TempDirectory() as temp:
self.assertFalse(ZipDirectory.has_original_sequence(temp.path))
directory = create_ziphmm_directory(temp.path)
self.assertTrue(ZipDirectory.has_original_sequence(directory))