def __init__(self, indir, outdir, indices, group2samples, matched,
plotfmt=None, pval=1.0):
Analysis.__init__(self, indir, outdir)
self.indices = indices
self.group2samples = group2samples
self.matched = matched
self.plotfmt = plotfmt
self.pval = pval
def __init__(self, indir, outdir, opts):
Analysis.__init__(self, indir, outdir, opts)
def __init__(self, indir, outdir, opts, clones):
Analysis.__init__(self, indir, outdir, opts)
self.clones = clones
def __init__(self, major_clones_dir, outdir, opts, c2n2s_dir):
Analysis.__init__(self, major_clones_dir, outdir, opts)
self.c2n2s_dir = c2n2s_dir