def __init__(self, parent, *args, **kw):
BasePopup.__init__(self,
parent=parent,
title='Create axis unit',
modal=True,
**kw)
def __init__(self, parent, *args, **kw):
self.spectrumConditions = []
self.col = None
self.spectrum = None
BasePopup.__init__(self, parent=parent, title='New Contour File', **kw)
def __init__(self, parent, *args, **kw):
self.guiParent = parent
self.sourceName = 'RefDB'
self.chemAtomNmrRefs = {}
BasePopup.__init__(self, parent=parent, title="Resonance : Reference Chemical Shifts", **kw)
def destroy(self):
for func in ('__init__','delete','setName'):
self.unregisterNotify(self.updateSpectra, 'ccp.nmr.Nmr.Experiment', func)
self.unregisterNotify(self.updateSpectra, 'ccp.nmr.Nmr.DataSource', func)
BasePopup.destroy(self)
def __init__(self, parent, *args, **kw):
self.waiting = False
self.molSystem = None
self.residue = None
self.jCouplings = []
self.atomNames = []
self.measureJCouplingList = None
self.predictJCouplingList = None
self.coeffAtomNames = []
self.coefficients = {}
self.coefficient = None
for i in range(3):
self.coefficients[i] = {}
BasePopup.__init__(
self,
parent=parent,
title='Predict Karplus Coefficients from J Coupling',
**kw)
self.updateJCouplingLists()
self.updateMolSystems()
self.updateAfter()
def destroy(self):
for func in ('__init__', 'delete', 'setName'):
self.unregisterNotify(self.updateWindows,
'ccpnmr.Analysis.SpectrumWindow', func)
BasePopup.destroy(self)
def destroy(self):
for func in ('__init__', 'delete'):
self.unregisterNotify(self.updateStructureGen,
'ccp.nmr.Nmr.StructureGeneration', func)
BasePopup.destroy(self)
def destroy(self):
for func in ('__init__', 'delete', 'setAnnotation', 'setNumAliasing',
'setPosition'):
self.unregisterNotify(self.updateAfter, 'ccp.nmr.Nmr.PeakDim',
func)
BasePopup.destroy(self)
def __init__(self, parent, *args, **kw):
self.spectrum = None
BasePopup.__init__(self,
parent=parent,
title='Add existing contour file',
**kw)
def __init__(self, parent):
BasePopup.__init__(self, parent=parent, title=" Dangle Prediction Graph",
transient=False, borderwidth=6)
parent.protocol("WM_DELETE_WINDOW", self.close)
self.geometry('700x700+50+50')
def __init__(self, parent, isModal=False, *args, **kw):
title = 'Project : Register with CCPN'
BasePopup.__init__(self,
parent=parent,
title=title,
modal=isModal,
**kw)
def __init__(self, parent, *args, **kw):
self.guiParent = parent
self.expSeries = None
self.conditionPoint = None
self.waiting = 0
BasePopup.__init__(self, parent, title="Experiment : NMR Series", **kw)
def __init__(self, parent, *args, **kw):
self.spectrum = None
BasePopup.__init__(self,
parent=parent,
title='Peak : Peak Finding',
**kw)
def __init__(self, parent, *args, **kw):
self.measurementType = None
BasePopup.__init__(self,
parent=parent,
title='Create axis type',
modal=True,
**kw)
def __init__(self, parent, *args, **kw):
self.axisType = None
BasePopup.__init__(self,
parent=parent,
title='Create panel type',
modal=True,
**kw)
def open(self):
self.updateAxisUnitTable()
self.updateAxisTypeTable()
self.updatePanelTypeTable()
self.selectAxisUnit()
self.selectAxisType()
self.selectPanelType()
BasePopup.open(self)
def __init__(self, parent, *args, **kw):
self.waiting = False
self.contourFileDir = None
BasePopup.__init__(self,
parent=parent,
title='Spectrum Contour Files',
**kw)
def __init__(self, parent, *args, **kw):
self.chain = None
self.shiftList = None
self.predictionDict = {}
BasePopup.__init__(self,
parent=parent,
title='Structure : Predict Secondary Structure')
def __init__(self, parent, dataDim, position):
self.dataDim = dataDim
self.position = position
BasePopup.__init__(self,
parent=parent,
title='Set spectrum referencing',
modal=True,
transient=True)
def __init__(self, parent, peak=None, *args, **kw):
self.peak = peak
self.peakDim = None
self.guiParent = parent
BasePopup.__init__(self,
parent=parent,
title="Edit Peak Aliasing",
**kw)
def __init__(self, parent, *args, **kw):
self.experiment = None
self.currentObject = None
#self.currentObjects = [] # looks obsolete
BasePopup.__init__(self,
parent=parent,
title='Experiment : Open Spectra',
**kw)
def destroy(self):
for func in ('__init__', 'delete'):
self.unregisterNotify(self.updateChains,
'ccp.molecule.MolSystem.Chain', func)
for func in ('__init__', 'delete'):
self.unregisterNotify(self.updateShiftLists,
'ccp.nmr.Nmr.ShiftList', func)
BasePopup.destroy(self)
def __init__(self, parent, *args, **kw):
self.residue = None
self.chain = None
self.shiftList = None
BasePopup.__init__(self,
parent=parent,
title="Molecule : Residue Information",
**kw)
def __init__(self, parent, *args, **kw):
self.guiParent = parent
self.peakLists = []
self.constraintLists = []
self.constraintSet = None
BasePopup.__init__(self,
parent=parent,
title="Chart : Residue Interaction Matrix",
**kw)
def __init__(self, parent, *args, **kw):
self.chain = None
self.shiftList = None
self.predictionDict = {}
BasePopup.__init__(
self,
parent=parent,
title='Data Analysis : Predict Shifts from Sequence')
def destroy(self):
for func in ('__init__', 'delete', 'setValue', 'setError'):
for clazz in ('ccp.nmr.Nmr.JCoupling', ):
self.unregisterNotify(self.updateAfter, clazz, func)
for func in ('__init__', 'delete'):
for clazz in ('ccp.nmr.Nmr.JCouplingList', ):
self.unregisterNotify(self.updateJCouplingLists, clazz, func)
BasePopup.destroy(self)
def __init__(self, parent, *args, **kw):
self.visibleSpectra = parent.visibleSpectra
self.toolbarSpectra = parent.toolbarSpectra
self.waiting = False
self.window = None
BasePopup.__init__(self,
parent=parent,
title='Window : New Window',
**kw)
def __init__(self, parent, *args, **kw):
self.font = 'Helvetica 10'
self.sFont = 'Helvetica %d'
self.project = parent.project
self.guiParent = parent
self.chemCompDict = {}
self.createChemCompDict()
self.waiting = False
BasePopup.__init__(self, parent,
title="Residue Type Probabilities", **kw)
def destroy(self):
for clazz in ('ccp.nmr.Nmr.Experiment', 'ccp.nmr.Nmr.DataSource'):
self.registerNotify(self.updateAfter, clazz, 'setName')
for func in ('__init__', 'delete', ''):
self.unregisterNotify(self.updateAfter,
'ccpnmr.Analysis.StoredContour', func)
###self.unregisterNotify(self.updateAfter, 'memops.Implementation.Url', 'setPath')
BasePopup.destroy(self)
def destroy(self):
for func in ('__init__', 'delete'):
for clazz in ('ccp.nmr.Nmr.ShiftList', ):
self.unregisterNotify(self.updateShiftLists, clazz, func)
for func in ('__init__', 'delete', 'setNmrChains', 'setResidue',
'setResonances', 'addResonance', 'removeResonance'):
self.unregisterNotify(self.updateSpinSystemsAfter,
'ccp.nmr.Nmr.ResonanceGroup', func)
BasePopup.destroy(self)
def __init__(self, parent, *args, **kw):
self.molSystem = None
self.structure = None
self.model = None
self.waiting = False
self.colorScheme = None
self.ccpCode = None # Which Rama background to use
self.residue = None
self.labelMode = LABEL_MODES[1]
BasePopup.__init__(self, parent=parent, title='Chart : Ramachandran Plot', **kw)
def __init__(self, parent, *args, **kw):
'''Init. Args: parent: guiParent.
'''
self.guiParent = parent
self.spinSystem1 = None
self.spinSystem2 = None
self.correction = True
self.protonatedShiftList = None
self.deuteratedShiftList = None
BasePopup.__init__(self, parent, title="Compare Spin Systems", **kw)
self.waiting = False
def __init__(self, parent, controler, *args, **kw):
self.font = 'Helvetica 10'
self.sFont = 'Helvetica %d'
self.project = parent.project
self.guiParent = parent
self.sourceName = 'RefDB'
self.connector = controler
self.tabbedFrame = None
self.saveLoadTab = None
self.assignTab = None
self.spectrumSelectionTab = None
self.resultsTab = None
self.annealingSettingsTab = None
self.infoLabel = None
self.waiting = False
BasePopup.__init__(self, parent, title="Assignment Suggestions", **kw)
def open(self):
self.updateAfter()
BasePopup.open(self)
def destroy(self):
'''Destroy the popup.'''
self.administerNotifiers(self.unregisterNotify)
BasePopup.destroy(self)
def open(self):
'''Open the popup. A standard method.'''
self.updateAfter()
BasePopup.open(self)