def input_schema(self):
return MultiSchema({
'cptevents':
PartialSchema.from_schema(cptevents_schema),
'icustayevents':
PartialSchema.from_schema(icustayevents_schema)
})
def input_schema(self):
return MultiSchema({
'admissions':
PartialSchema.from_schema(mimic_schema.admissions_schema),
'patients':
PartialSchema.from_schema(mimic_schema.patients_schema),
'icustayevents':
PartialSchema.from_schema(mimic_schema.icustayevents_schema)
})
def df_to_hdf5(file_name, df):
if not os.path.splitext(file_name)[1] == '.hdf':
file_name = os.path.join(file_name, '.hdf')
sp = os.path.splitext(file_name)[0]
local_storage_dir = mimic_login.get_local_storage_dir()
file_path = os.path.join(local_storage_dir, file_name)
store = HdfDataStore(PartialSchema(sp), file_path)
store.store(df)
return FileLink(os.path.relpath(file_path),
result_html_prefix='Right-click and save: ')
def input_schema(self):
return PartialSchema.from_schema(ioevents_schema)
def input_schema(self):
return MultiSchema({
'admissions': PartialSchema.from_schema(admissions_schema),
'patients': PartialSchema.from_schema(patients_schema),
'icustayevents': PartialSchema.from_schema(icustayevents_schema)
})
def input_schema(self):
return MultiSchema({
'cptevents': PartialSchema.from_schema(cptevents_schema),
'icustayevents': PartialSchema.from_schema(icustayevents_schema)
})
def _get_sql_loader(sql):
loader = SAQueryDataStore(PartialSchema('query'), mimic_login.get_engine(),
text(sql))
return loader
def input_schema(self):
return PartialSchema.from_schema(ioevents_schema)
