def input_schema(self): return MultiSchema({ 'cptevents': PartialSchema.from_schema(cptevents_schema), 'icustayevents': PartialSchema.from_schema(icustayevents_schema) })
def input_schema(self): return MultiSchema({ 'admissions': PartialSchema.from_schema(mimic_schema.admissions_schema), 'patients': PartialSchema.from_schema(mimic_schema.patients_schema), 'icustayevents': PartialSchema.from_schema(mimic_schema.icustayevents_schema) })
def df_to_hdf5(file_name, df): if not os.path.splitext(file_name)[1] == '.hdf': file_name = os.path.join(file_name, '.hdf') sp = os.path.splitext(file_name)[0] local_storage_dir = mimic_login.get_local_storage_dir() file_path = os.path.join(local_storage_dir, file_name) store = HdfDataStore(PartialSchema(sp), file_path) store.store(df) return FileLink(os.path.relpath(file_path), result_html_prefix='Right-click and save: ')
def input_schema(self): return PartialSchema.from_schema(ioevents_schema)
def input_schema(self): return MultiSchema({ 'admissions': PartialSchema.from_schema(admissions_schema), 'patients': PartialSchema.from_schema(patients_schema), 'icustayevents': PartialSchema.from_schema(icustayevents_schema) })
def _get_sql_loader(sql): loader = SAQueryDataStore(PartialSchema('query'), mimic_login.get_engine(), text(sql)) return loader