def testDiffInsertionSeqs(self):
"""Verify computation of AAI on two different sequences with multiple insertions."""
aai = AminoAcidIdentity()
score = aai.aai('A-C-G-T', 'AACCGGT')
self.assertAlmostEqual(score, 4.0 / 7.0)
def testSimilarSeqs(self):
"""Verify computation of AAI on two similar sequences."""
aai = AminoAcidIdentity()
score = aai.aai('ACGT', 'ACGG')
self.assertAlmostEqual(score, 3.0 / 4.0)
def testIdenticalInsertionSeqs(self):
"""Verify computation of AAI on two identical sequences with multiple insertions."""
aai = AminoAcidIdentity()
score = aai.aai('A-C-G-T', 'A-C-G-T')
self.assertAlmostEqual(score, 1.0)
def testPartialOverlappingSeqs(self):
"""Verify computation of AAI on two partially overlapping sequences."""
aai = AminoAcidIdentity()
score = aai.aai('ACGT--', '--GTAC')
self.assertAlmostEqual(score, 1.0)
def testIncompleteSeqs(self):
"""Verify computation of AAI on incomplete sequence."""
aai = AminoAcidIdentity()
score = aai.aai('AAAACGTTTT', '---ACGG---')
self.assertAlmostEqual(score, 3.0 / 4.0)
def testDiffSeqs(self):
"""Verify computation of AAI on two completely different sequences."""
aai = AminoAcidIdentity()
score = aai.aai('ACGT', 'TGCA')
self.assertAlmostEqual(score, 0.0)
def testNonOverlappingSeqs(self):
"""Verify computation of AAI on two non-overlapping sequences."""
aai = AminoAcidIdentity()
score = aai.aai('ACGT----', '----TGCA')
self.assertAlmostEqual(score, 0.0)
def testDiffInsertionSeqs(self):
"""Verify computation of AAI on two different sequences with multiple insertions."""
aai = AminoAcidIdentity()
score = aai.aai('A-C-G-T', 'AACCGGT')
self.assertAlmostEqual(score, 4.0 / 7.0)
def testIdentiticalSeqs(self):
"""Verify computation of AAI on identical sequences."""
aai = AminoAcidIdentity()
score = aai.aai('ACGT', 'ACGT')
self.assertAlmostEqual(score, 1.0)
def testSimilarSeqs(self):
"""Verify computation of AAI on two similar sequences."""
aai = AminoAcidIdentity()
score = aai.aai('ACGT', 'ACGG')
self.assertAlmostEqual(score, 3.0 / 4.0)
def testIdenticalInsertionSeqs(self):
"""Verify computation of AAI on two identical sequences with multiple insertions."""
aai = AminoAcidIdentity()
score = aai.aai('A-C-G-T', 'A-C-G-T')
self.assertAlmostEqual(score, 1.0)
def testIncompleteSeqs(self):
"""Verify computation of AAI on incomplete sequence."""
aai = AminoAcidIdentity()
score = aai.aai('AAAACGTTTT', '---ACGG---')
self.assertAlmostEqual(score, 3.0 / 4.0)
def testPartialOverlappingSeqs(self):
"""Verify computation of AAI on two partially overlapping sequences."""
aai = AminoAcidIdentity()
score = aai.aai('ACGT--', '--GTAC')
self.assertAlmostEqual(score, 1.0)
def testNonOverlappingSeqs(self):
"""Verify computation of AAI on two non-overlapping sequences."""
aai = AminoAcidIdentity()
score = aai.aai('ACGT----', '----TGCA')
self.assertAlmostEqual(score, 0.0)
def testDiffSeqs(self):
"""Verify computation of AAI on two completely different sequences."""
aai = AminoAcidIdentity()
score = aai.aai('ACGT', 'TGCA')
self.assertAlmostEqual(score, 0.0)
def testIdentiticalSeqs(self):
"""Verify computation of AAI on identical sequences."""
aai = AminoAcidIdentity()
score = aai.aai('ACGT', 'ACGT')
self.assertAlmostEqual(score, 1.0)
