def testDiffInsertionSeqs(self): """Verify computation of AAI on two different sequences with multiple insertions.""" aai = AminoAcidIdentity() score = aai.aai('A-C-G-T', 'AACCGGT') self.assertAlmostEqual(score, 4.0 / 7.0)
def testSimilarSeqs(self): """Verify computation of AAI on two similar sequences.""" aai = AminoAcidIdentity() score = aai.aai('ACGT', 'ACGG') self.assertAlmostEqual(score, 3.0 / 4.0)
def testIdenticalInsertionSeqs(self): """Verify computation of AAI on two identical sequences with multiple insertions.""" aai = AminoAcidIdentity() score = aai.aai('A-C-G-T', 'A-C-G-T') self.assertAlmostEqual(score, 1.0)
def testPartialOverlappingSeqs(self): """Verify computation of AAI on two partially overlapping sequences.""" aai = AminoAcidIdentity() score = aai.aai('ACGT--', '--GTAC') self.assertAlmostEqual(score, 1.0)
def testIncompleteSeqs(self): """Verify computation of AAI on incomplete sequence.""" aai = AminoAcidIdentity() score = aai.aai('AAAACGTTTT', '---ACGG---') self.assertAlmostEqual(score, 3.0 / 4.0)
def testDiffSeqs(self): """Verify computation of AAI on two completely different sequences.""" aai = AminoAcidIdentity() score = aai.aai('ACGT', 'TGCA') self.assertAlmostEqual(score, 0.0)
def testNonOverlappingSeqs(self): """Verify computation of AAI on two non-overlapping sequences.""" aai = AminoAcidIdentity() score = aai.aai('ACGT----', '----TGCA') self.assertAlmostEqual(score, 0.0)
def testIdentiticalSeqs(self): """Verify computation of AAI on identical sequences.""" aai = AminoAcidIdentity() score = aai.aai('ACGT', 'ACGT') self.assertAlmostEqual(score, 1.0)