def test_populate_dynamic_options():
test_connection = "mysql:///dbserver/galaxy"
test_runner = "pbs:///test1"
ud = {"galaxy_universe_database_connection": test_connection,
"galaxy_tool_runner_cooltool1": test_runner}
app = TestApp(ud=ud)
option_manager = TestOptionManager(app)
populate_dynamic_options(option_manager)
options = option_manager.options
assert options["galaxy:tool_runners"]["cooltool1"] == test_runner
assert options["app:main"]["database_connection"] == test_connection
def update_galaxy_config(self):
"""
Update Galaxy application configuration.
Optionally set Galaxy to use multiple processes, then populate dynamic
options (i.e., arbitrary options coming from user data), adjust system
paths and set admin users.
"""
if self.multiple_processes():
populate_process_options(self.option_manager)
populate_dynamic_options(self.option_manager)
populate_galaxy_paths(self.option_manager)
populate_admin_users(self.option_manager)
def update_galaxy_config(self):
"""
Update Galaxy application configuration.
Optionally set Galaxy to use multiple processes, then populate dynamic
options (i.e., arbitrary options coming from user data), adjust system
paths and set admin users.
"""
if self.multiple_processes():
populate_process_options(self.option_manager)
populate_dynamic_options(self.option_manager)
populate_galaxy_paths(self.option_manager)
populate_admin_users(self.option_manager)
def test_populate_dynamic_options():
test_connection = "mysql:///dbserver/galaxy"
test_runner = "pbs:///test1"
ud = {
"galaxy_universe_database_connection": test_connection,
"galaxy_tool_runner_cooltool1": test_runner
}
app = TestApp(ud=ud)
option_manager = TestOptionManager(app)
populate_dynamic_options(option_manager)
options = option_manager.options
assert options["galaxy:tool_runners"]["cooltool1"] == test_runner
assert options["app:main"]["database_connection"] == test_connection
def update_galaxy_config(self):
if self._multiple_processes():
populate_process_options(self.option_manager)
populate_dynamic_options(self.option_manager)
populate_galaxy_paths(self.option_manager)
populate_admin_users(self.option_manager)
