コード例 #1
0
def test_populate_dynamic_options():
    test_connection = "mysql:///dbserver/galaxy"
    test_runner = "pbs:///test1"
    ud = {"galaxy_universe_database_connection": test_connection,
          "galaxy_tool_runner_cooltool1": test_runner}
    app = TestApp(ud=ud)
    option_manager = TestOptionManager(app)
    populate_dynamic_options(option_manager)
    options = option_manager.options
    assert options["galaxy:tool_runners"]["cooltool1"] == test_runner
    assert options["app:main"]["database_connection"] == test_connection
コード例 #2
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ファイル: galaxy.py プロジェクト: blankenberg/cloudman 
    def update_galaxy_config(self):
        """
        Update Galaxy application configuration.

        Optionally set Galaxy to use multiple processes, then populate dynamic
        options (i.e., arbitrary options coming from user data), adjust system
        paths and set admin users.
        """
        if self.multiple_processes():
            populate_process_options(self.option_manager)
        populate_dynamic_options(self.option_manager)
        populate_galaxy_paths(self.option_manager)
        populate_admin_users(self.option_manager)
コード例 #3
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ファイル: galaxy.py プロジェクト: ddavidovic/cloudman 
    def update_galaxy_config(self):
        """
        Update Galaxy application configuration.

        Optionally set Galaxy to use multiple processes, then populate dynamic
        options (i.e., arbitrary options coming from user data), adjust system
        paths and set admin users.
        """
        if self.multiple_processes():
            populate_process_options(self.option_manager)
        populate_dynamic_options(self.option_manager)
        populate_galaxy_paths(self.option_manager)
        populate_admin_users(self.option_manager)
コード例 #4
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ファイル: test_galaxy_conf.py プロジェクト: nuwang/cloudman 
def test_populate_dynamic_options():
    test_connection = "mysql:///dbserver/galaxy"
    test_runner = "pbs:///test1"
    ud = {
        "galaxy_universe_database_connection": test_connection,
        "galaxy_tool_runner_cooltool1": test_runner
    }
    app = TestApp(ud=ud)
    option_manager = TestOptionManager(app)
    populate_dynamic_options(option_manager)
    options = option_manager.options
    assert options["galaxy:tool_runners"]["cooltool1"] == test_runner
    assert options["app:main"]["database_connection"] == test_connection
コード例 #5
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ファイル: galaxy.py プロジェクト: jmchilton/cloudman 
 def update_galaxy_config(self):
     if self._multiple_processes():
         populate_process_options(self.option_manager)
     populate_dynamic_options(self.option_manager)
     populate_galaxy_paths(self.option_manager)
     populate_admin_users(self.option_manager)