def test_input_as_lines(self):
"""Test foldalign stdout input as lines"""
f = foldalign(InputHandler='_input_as_lines')
res = f(self.input)
self.assertEqual(res['ExitStatus'],0)
assert res['StdOut'] is not None
res.cleanUp()
def test_input_as_lines(self):
"""Test foldalign stdout input as lines"""
f = foldalign(InputHandler='_input_as_lines')
res = f(self.input)
self.assertEqual(res['ExitStatus'], 0)
assert res['StdOut'] is not None
res.cleanUp()
def test_get_result_path(self):
"""Tests foldalign result path"""
f = foldalign(InputHandler='_input_as_lines')
res = f(self.input)
self.assertEqualItems(res.keys(),['StdOut','StdErr','ExitStatus'])
self.assertEqual(res['ExitStatus'],0)
assert res['StdOut'] is not None
res.cleanUp()
def test_get_result_path(self):
"""Tests foldalign result path"""
f = foldalign(InputHandler='_input_as_lines')
res = f(self.input)
self.assertEqualItems(res.keys(), ['StdOut', 'StdErr', 'ExitStatus'])
self.assertEqual(res['ExitStatus'], 0)
assert res['StdOut'] is not None
res.cleanUp()
def test_input_as_string(self):
"""Test foldalign stdout input as string"""
f = foldalign()
t = open('/tmp/single.col','w')
t.write('\n'.join(self.input))
t.close()
res = f('/tmp/single.col')
self.assertEqual(res['ExitStatus'],0)
assert res['StdOut'] is not None
res.cleanUp()
remove('/tmp/single.col')
def test_input_as_string(self):
"""Test foldalign stdout input as string"""
f = foldalign()
t = open('/tmp/single.col', 'w')
t.write('\n'.join(self.input))
t.close()
res = f('/tmp/single.col')
self.assertEqual(res['ExitStatus'], 0)
assert res['StdOut'] is not None
res.cleanUp()
remove('/tmp/single.col')