def __init__(self, data, title, flags="chroma", parent=None, **k):
QWidget.__init__(self, parent)
MSDialogController.__init__(self, 0, parent)
self.model = self.qApp.model
self.view = self.qApp.view
self.data = data
self.title = title
self.flags = flags
if self.flags == 'peak':
if self.acTree not in (self.view.treeView_2, self.view.treeView_3):
print "Unknown Error"
return
idx = self.acTree.selectedIndexes()[0]
s = qApp.instance().dockControl.currentSample[
1 if self.acTree is self.view.treeView_2 else 2]
if s is None:
print "unknow error"
return
values = map(float, idx.data().toString().split('/')[:2])
self.currentPeak = s.peakAt(*values)
#connection to update the selected Peak object
self.connect(self.acTree, SIGNAL("changedLine"),
self.updateCurrentPeak)
self.minX, self.maxX, self.maxY = [0] * 3
#if flags != 'peak':
# self.minX, self.maxX, self.maxY = self.getMax()
self.pw = PlotWidget(self.minX, self.maxX, self.maxY, parent=self,
**k) #parent=self,
#self.pw.setAttribute(Qt.WA_DeleteOnClose)#plotItem.setAttribute(Qt.WA_PaintOnScreen & Qt.WA_PaintUnclipped)
if k.get('antialiased', False):
self.pw.setRenderHint(0x01) #antialiasing i suppose
self.pw.setTitle(title)
self.pw.updateGrid()
self._setupUi()
self.connect(self, SIGNAL('linePlotted'), self.updateContextMenu)
self.connect(self.view.sampleTableView,
SIGNAL("disHighlightRequested(QModelIndex)"),
self.disHighlightOne)
self.connect(self.view.sampleTableView,
SIGNAL("highlightRequested(QModelIndex)"), self.highlight)
self.connect(self.view.sampleTableView,
SIGNAL("noHighlightRequested()"), self.disHighlight)
self.connect(self.view.ppmEditer, SIGNAL('valueChanged(double)'),
self.redrawAll)
self.drawnItems = {}
self.trashItems = [] #why unecessary? nope to collect annotation stuff
self.textLabels = []
self.pixmaps = []
self.dataPoints = None
self._plotting(self.data) #initial plotting
def __init__(self,lspl, win, creation):
MSDialogController.__init__(self, lspl, win, creation)
QObject.connect(self.view.lineEdit, SIGNAL("textChanged(const QString &)"), self.checkLineEdit)
if paramikoSupport:
try:
QObject.connect(self.view.parallel, SIGNAL("clicked()"), self.showSSHConnect)
except AttributeError:
pass
self.checkLineEdit("")
self.view.exec_()
def __init__(self, lspl, win, creation):
MSDialogController.__init__(self, lspl, win, creation)
QObject.connect(self.view.lineEdit,
SIGNAL("textChanged(const QString &)"),
self.checkLineEdit)
if paramikoSupport:
try:
QObject.connect(self.view.parallel, SIGNAL("clicked()"),
self.showSSHConnect)
except AttributeError:
pass
self.checkLineEdit("")
self.view.exec_()
def __init__(self, data, title, flags="chroma", parent=None, **k):
QWidget.__init__(self, parent)
MSDialogController.__init__(self, 0, parent)
self.model = self.qApp.model
self.view = self.qApp.view
self.data=data
self.title=title
self.flags=flags
if self.flags == 'peak':
if self.acTree not in (self.view.treeView_2, self.view.treeView_3):
print "Unknown Error"
return
idx=self.acTree.selectedIndexes()[0]
s = qApp.instance().dockControl.currentSample[1 if self.acTree is self.view.treeView_2 else 2]
if s is None:
print "unknow error"
return
values = map(float, idx.data().toString().split('/')[:2])
self.currentPeak = s.peakAt(*values)
#connection to update the selected Peak object
self.connect(self.acTree, SIGNAL("changedLine"), self.updateCurrentPeak)
self.minX, self.maxX, self.maxY = [0] * 3
#if flags != 'peak':
# self.minX, self.maxX, self.maxY = self.getMax()
self.pw = PlotWidget(self.minX, self.maxX, self.maxY, parent=self, **k)#parent=self,
#self.pw.setAttribute(Qt.WA_DeleteOnClose)#plotItem.setAttribute(Qt.WA_PaintOnScreen & Qt.WA_PaintUnclipped)
if k.get('antialiased', False):
self.pw.setRenderHint(0x01)#antialiasing i suppose
self.pw.setTitle(title)
self.pw.updateGrid()
self._setupUi()
self.connect(self, SIGNAL('linePlotted'), self.updateContextMenu)
self.connect(self.view.sampleTableView, SIGNAL("disHighlightRequested(QModelIndex)"), self.disHighlightOne)
self.connect(self.view.sampleTableView, SIGNAL("highlightRequested(QModelIndex)"), self.highlight)
self.connect(self.view.sampleTableView, SIGNAL("noHighlightRequested()"), self.disHighlight)
self.connect(self.view.ppmEditer, SIGNAL('valueChanged(double)'), self.redrawAll)
self.drawnItems = {}
self.trashItems=[]#why unecessary? nope to collect annotation stuff
self.textLabels = []
self.pixmaps = []
self.dataPoints = None
self._plotting(self.data)#initial plotting
def __init__(self, lspl, visu, creation):
MSDialogController.__init__(self, lspl, visu, creation)
self.polarity=1 #initialisation
if not self.model:
self.goodIdx = 0
else:
self.goodIdx = 0 if self.model[0].kind == 'HighRes' else 1
self.populateTableViews(self.polarity)
self.allAddsChecked = False
self.allFragsChecked = False
QObject.connect(self.view.posmode, SIGNAL('toggled(bool)'), self.updatePolarity)
QObject.connect(self.view.checkAllAdds, SIGNAL('clicked()'), self.checkAdds)
QObject.connect(self.view.checkAllFrags, SIGNAL('clicked()'), self.checkFrags)
self.view.exec_()
def __init__(self, lspl, visu, creation, showDirectResult=False):
"""
constructor
"""
#data needed to process
MSDialogController.__init__(self, lspl, visu, creation)
self.databases ={"KEGG":None,
"METJP":None,
"BIOCYC":None,
"METEXPLORE":None}
QObject.connect(self.view.checkBox_8, SIGNAL('toggled(bool)'), self._update)
self._update(True)#initializing to metexplore so we keep enabled
self.showDirectResult = showDirectResult
self.view.exec_()
def __init__(self, lspl, visu, creation):
MSDialogController.__init__(self, lspl, visu, creation)
self.polarity = 1 #initialisation
if not self.model:
self.goodIdx = 0
else:
self.goodIdx = 0 if self.model[0].kind == 'HighRes' else 1
self.populateTableViews(self.polarity)
self.allAddsChecked = False
self.allFragsChecked = False
QObject.connect(self.view.posmode, SIGNAL('toggled(bool)'),
self.updatePolarity)
QObject.connect(self.view.checkAllAdds, SIGNAL('clicked()'),
self.checkAdds)
QObject.connect(self.view.checkAllFrags, SIGNAL('clicked()'),
self.checkFrags)
self.view.exec_()
