def showClusterTable(self):
if not self.view.sampleTableView.selectedIndexes(
): #not self.acTree.selectedIndexes():
s, b = QInputDialog.getItem(
self.view, "Select one sample", "Select one sample :",
[spl.shortName() for spl in self.model])
if not b:
return
sample = self.model.sample(str(s), fullNameEntry=False)
else:
idx = self.view.sampleTableView.selectedIndexes()[0]
sample = self.model.sample(idx.data().toString(),
fullNameEntry=False)
if sample is None:
print("sample not found...")
return
if not sample.mappedPeaks:
self.view.showErrorMessage(
"No peaks found",
"This sample does not have peaks, please do peak picking before"
)
view = QTableView()
view.setSortingEnabled(True)
view.horizontalHeader().setStretchLastSection(True)
view.setModel(
MSDialogController.getSampleModel(sample, flags='cluster'))
self.view.addMdiSubWindow(view,
"ClusterList of%s" % str(sample.shortName()))
def showPeakTable(self):
"""
TODO: write little function to check if sample is None or good
or write exception with good code
"""
if not self.view.sampleTableView.selectedIndexes(
): #not self.acTree.selectedIndexes():
s, b = QInputDialog.getItem(
self.view, "Select one sample", "Select one sample :",
[spl.shortName() for spl in self.model])
if not b:
return
sample = self.model.sample(str(s), fullNameEntry=False)
else:
idx = self.view.sampleTableView.selectedIndexes()[0]
sample = self.model.sample(idx.data().toString(),
fullNameEntry=False)
if sample is None:
print("sample not found...")
return
if not sample.rawPeaks:
self.view.showErrorMessage(
"No peaks found",
"This sample does not have peaks, please do peak picking before"
)
view = QTableView()
view.horizontalHeader().setStretchLastSection(True)
view.setSortingEnabled(True)
model = MSDialogController.getSampleModel(sample, flags='peak')
view.setModel(model)
self.view.addMdiSubWindow(
view, " ".join(["PeakList of",
str(sample.shortName())]))
def showPeakTable(self):
"""
TODO: write little function to check if sample is None or good
or write exception with good code
"""
if not self.view.sampleTableView.selectedIndexes():#not self.acTree.selectedIndexes():
s, b = QInputDialog.getItem(self.view, "Select one sample", "Select one sample :",
[spl.shortName() for spl in self.model])
if not b:
return
sample = self.model.sample(str(s), fullNameEntry=False)
else:
idx = self.view.sampleTableView.selectedIndexes()[0]
sample = self.model.sample(idx.data().toString(), fullNameEntry=False)
if sample is None:
print ("sample not found...")
return
if not sample.rawPeaks:
self.view.showErrorMessage("No peaks found",
"This sample does not have peaks, please do peak picking before")
view=QTableView()
view.horizontalHeader().setStretchLastSection(True)
view.setSortingEnabled(True)
model=MSDialogController.getSampleModel(sample, flags='peak')
view.setModel(model)
self.view.addMdiSubWindow(view, " ".join(["PeakList of", str(sample.shortName())]))
def showClusterTable(self):
if not self.view.sampleTableView.selectedIndexes():#not self.acTree.selectedIndexes():
s, b = QInputDialog.getItem(self.view, "Select one sample", "Select one sample :",
[spl.shortName() for spl in self.model])
if not b:
return
sample = self.model.sample(str(s), fullNameEntry=False)
else:
idx = self.view.sampleTableView.selectedIndexes()[0]
sample = self.model.sample(idx.data().toString(), fullNameEntry=False)
if sample is None:
print ("sample not found...")
return
if not sample.mappedPeaks:
self.view.showErrorMessage("No peaks found",
"This sample does not have peaks, please do peak picking before")
view= QTableView()
view.setSortingEnabled(True)
view.horizontalHeader().setStretchLastSection(True)
view.setModel(MSDialogController.getSampleModel(sample, flags='cluster'))
self.view.addMdiSubWindow(view, "ClusterList of%s"%str(sample.shortName()))
