def __init__(self, url, name, *args, **kwargs):
import coordinator
self.server = coordinator.get_connection(url, name)
self.url = url
self.name = name
self.seqInfoDict = _SeqLenDictWrapper(self)
SequenceDB.__init__(self, *args, **kwargs)
def __init__(self, url, name, *args, **kwargs):
import coordinator
self.server = coordinator.get_connection(url, name)
self.url = url
self.name = name
self.seqInfoDict = _SeqLenDictWrapper(self)
SequenceDB.__init__(self, *args, **kwargs)
def __init__(self, url=None, name=None, idDictClass=dict, **kwargs):
cnestedlist.NLMSA.__init__(self, mode="xmlrpc", idDictClass=idDictClass, **kwargs)
import coordinator
self.server = coordinator.get_connection(url, name) # GET CONNECTION TO THE SERVER
self.url = url
self.name = name
l = self.server.getInfo() # READ NS INFO TABLE
for nsID, is_lpo, nsLength, is_union in l:
ns = cnestedlist.NLMSASequence(self, None, None, "onDemand", is_union, nsLength) # is_lpo AUTOMATIC
self.addToSeqlist(ns) # ADD THIS TO THE INDEX
def __init__(self, url=None, name=None, idDictClass=dict, **kwargs):
cnestedlist.NLMSA.__init__(self, mode='xmlrpc',
idDictClass=idDictClass, **kwargs)
import coordinator
self.server = coordinator.get_connection(url, name)
self.url = url
self.name = name
l = self.server.getInfo() # READ NS INFO TABLE
for nsID, is_lpo, nsLength, is_union in l:
# is_lpo is automatic below.
ns = cnestedlist.NLMSASequence(self, None, None, 'onDemand',
is_union, nsLength)
self.addToSeqlist(ns) # ADD THIS TO THE INDEX
def __init__(self, url, name, seqDB,itemClass=AnnotationSeq,
itemSliceClass=AnnotationSlice, autoGC=True, **kwargs):
if autoGC: # automatically garbage collect unused objects
self._weakValueDict = classutil.RecentValueDictionary(autoGC)
else:
self._weakValueDict = {} # object cache
self.autoGC = autoGC
import coordinator
self.server = coordinator.get_connection(url, name)
self.url = url
self.name = name
self.seqDB = seqDB
self.sliceDB = AnnotationClientSliceDB(self)
self.itemClass = itemClass
self.itemSliceClass = itemSliceClass
def __init__(self,
url,
name,
seqDB,
itemClass=AnnotationSeq,
itemSliceClass=AnnotationSlice,
autoGC=True,
**kwargs):
if autoGC: # automatically garbage collect unused objects
self._weakValueDict = classutil.RecentValueDictionary(autoGC)
else:
self._weakValueDict = {} # object cache
self.autoGC = autoGC
import coordinator
self.server = coordinator.get_connection(url, name)
self.url = url
self.name = name
self.seqDB = seqDB
self.sliceDB = AnnotationClientSliceDB(self)
self.itemClass = itemClass
self.itemSliceClass = itemSliceClass
def _init_subclass(cls, db, url, name, **kwargs):
import coordinator
db.server = coordinator.get_connection(url, name)
db.url = url
db.name = name
db.seqInfoDict = SeqLenDictWrapper(db)
def _init_subclass(cls, db, url, name, **kwargs):
import coordinator
db.server = coordinator.get_connection(url,name)
db.url = url
db.name = name
db.seqInfoDict = SeqLenDictWrapper(db)