Beispiel #1
0
def test():
    np.seterr(all="ignore")
    samples, otus, tree, data, table = ctwc__distance_matrix.get_data(True)

    output = ctwc_recursive_select(data, tree, samples, otus, table)
    #output = ctwc_select(data, tree, samples, otus, table)
    INFO("Full data size: {0} X {1}".format(data.shape[0], data.shape[1]))
    for elem in output:
        INFO("{0}: {1} X {2}".format(elem, output[elem][0], output[elem][1]))
Beispiel #2
0
def test():
    np.seterr(all="ignore")
    samples, otus, tree, data, table = ctwc__distance_matrix.get_data(True)
    test_otu_distance_matrix(samples, otus, tree, data, table)
    test_sample_distance_matrix(samples, otus, tree, data, table)