def set_peek( self, dataset ):
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name )
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
dataset.blurb = "Web Ontology Language OWL"
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disc'
def set_peek(self, dataset, is_multi_byte=False):
"""Set the peek and blurb text"""
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek(dataset.file_name, is_multi_byte=is_multi_byte)
dataset.blurb = "MEME XML data"
else:
dataset.peek = "file does not exist"
dataset.blurb = "file purged from disk"
def set_peek( self, dataset, is_multi_byte=False ):
"""Set the peek and blurb text"""
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
dataset.blurb = 'RDF data'
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek(self, dataset, is_multi_byte=False):
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek(dataset.file_name,
is_multi_byte=is_multi_byte)
dataset.blurb = "Web Ontology Language OWL"
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disc'
def set_peek(self, dataset):
"""Set the peek and blurb text"""
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek(dataset.file_name)
dataset.blurb = "NCBI Blast XML data"
else:
dataset.peek = "file does not exist"
dataset.blurb = "file purged from disk"
def set_peek( self, dataset, is_multi_byte=False ):
"""Set the peek and blurb text"""
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
dataset.blurb = 'Turtle triple data'
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
if dataset.metadata.sequences:
dataset.blurb = "%s sequences" % util.commaify( str( dataset.metadata.sequences ) )
else:
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
try:
parsed_data = simplejson.load(open(dataset.file_name))
# dataset.peek = simplejson.dumps(data, sort_keys=True, indent=4)
dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
dataset.blurb = '%d sections' % len(parsed_data['sections'])
except Exception, e:
dataset.peek = 'Not FQTOC file'
dataset.blurb = 'Not FQTOC file'
def set_peek( self, dataset ):
"""Set the peek and blurb text"""
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name )
dataset.blurb = util.commaify( str( data.get_line_count( dataset.file_name ) ) ) + " rows"
#i don't think set_meta should not be called here, it should be called separately
self.set_meta( dataset )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
if dataset.metadata.sequences:
dataset.blurb = "%s sequences" % util.commaify( str( dataset.metadata.sequences ) )
else:
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
try:
parsed_data = simplejson.load(open(dataset.file_name))
# dataset.peek = simplejson.dumps(data, sort_keys=True, indent=4)
dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
dataset.blurb = '%d sections' % len(parsed_data['sections'])
except Exception, e:
dataset.peek = 'Not FQTOC file'
dataset.blurb = 'Not FQTOC file'
def set_peek( self, dataset, line_count=None ):
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name )
if line_count is None:
dataset.blurb = data.nice_size( dataset.get_size() )
else:
dataset.blurb = "%s lines, 454 Quality score file" % util.commaify( str( line_count ) )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, line_count=None ):
"""Set the peek and blurb text"""
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name )
if line_count is None:
dataset.blurb = "%s regions" % util.commaify( str( data.get_line_count( dataset.file_name ) ) )
else:
dataset.blurb = "%s regions" % util.commaify( str( line_count ) )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek(self, dataset, is_multi_byte=False):
if not dataset.dataset.purged:
self.sniff(dataset.file_name)
if (self.no_mols[1] == '1'):
dataset.blurb = "1 molecule"
else:
dataset.blurb = "%s molecules" % self.no_mols[1]
dataset.peek = data.get_file_peek(dataset.file_name, is_multi_byte=is_multi_byte)
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
# The file must exist on disk for the get_file_peek() method
dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
if dataset.metadata.blocks:
dataset.blurb = "%s blocks" % util.commaify( str( dataset.metadata.blocks ) )
else:
# Number of blocks is not known ( this should not happen ), and auto-detect is
# needed to set metadata
dataset.blurb = "? blocks"
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ):
if not dataset.dataset.purged:
# The file must exist on disk for the get_file_peek() method
dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
if dataset.metadata.blocks:
dataset.blurb = "%s blocks" % util.commaify( str( dataset.metadata.blocks ) )
else:
# Number of blocks is not known ( this should not happen ), and auto-detect is
# needed to set metadata
dataset.blurb = "? blocks"
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, line_count=None, is_multi_byte=False ):
"""Set the peek and blurb text"""
if not dataset.dataset.purged:
dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte )
if line_count is None:
# See if line_count is stored in the metadata
if dataset.metadata.data_lines:
dataset.blurb = "%s regions" % util.commaify( str( dataset.metadata.data_lines ) )
else:
# Number of lines is not known ( this should not happen ), and auto-detect is
# needed to set metadata
dataset.blurb = "? regions"
else:
dataset.blurb = "%s regions" % util.commaify( str( line_count ) )
else:
dataset.peek = 'file does not exist'
dataset.blurb = 'file purged from disk'
def set_peek(self, dataset):
dataset.peek = data.get_file_peek(dataset.file_name)
## dataset.peek = self.make_html_table( dataset.peek )
dataset.blurb = util.commaify(
str(data.get_line_count(dataset.file_name))) + " regions"
self.set_meta(dataset)
def set_peek( self, dataset ):
dataset.peek = data.get_file_peek( dataset.file_name )
## dataset.peek = self.make_html_table( dataset.peek )
dataset.blurb = util.commaify( str( data.get_line_count( dataset.file_name ) ) ) + " regions"
self.set_meta( dataset )
