def set_peek( self, dataset ): if not dataset.dataset.purged: dataset.peek = data.get_file_peek( dataset.file_name ) dataset.blurb = data.nice_size( dataset.get_size() ) else: dataset.peek = 'file does not exist' dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ): if not dataset.dataset.purged: dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte ) dataset.blurb = "Web Ontology Language OWL" else: dataset.peek = 'file does not exist' dataset.blurb = 'file purged from disc'
def set_peek(self, dataset, is_multi_byte=False): """Set the peek and blurb text""" if not dataset.dataset.purged: dataset.peek = data.get_file_peek(dataset.file_name, is_multi_byte=is_multi_byte) dataset.blurb = "MEME XML data" else: dataset.peek = "file does not exist" dataset.blurb = "file purged from disk"
def set_peek( self, dataset, is_multi_byte=False ): """Set the peek and blurb text""" if not dataset.dataset.purged: dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte ) dataset.blurb = 'RDF data' else: dataset.peek = 'file does not exist' dataset.blurb = 'file purged from disk'
def set_peek(self, dataset, is_multi_byte=False): if not dataset.dataset.purged: dataset.peek = data.get_file_peek(dataset.file_name, is_multi_byte=is_multi_byte) dataset.blurb = "Web Ontology Language OWL" else: dataset.peek = 'file does not exist' dataset.blurb = 'file purged from disc'
def set_peek(self, dataset): """Set the peek and blurb text""" if not dataset.dataset.purged: dataset.peek = data.get_file_peek(dataset.file_name) dataset.blurb = "NCBI Blast XML data" else: dataset.peek = "file does not exist" dataset.blurb = "file purged from disk"
def set_peek( self, dataset, is_multi_byte=False ): """Set the peek and blurb text""" if not dataset.dataset.purged: dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte ) dataset.blurb = 'Turtle triple data' else: dataset.peek = 'file does not exist' dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ): if not dataset.dataset.purged: dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte ) if dataset.metadata.sequences: dataset.blurb = "%s sequences" % util.commaify( str( dataset.metadata.sequences ) ) else: dataset.blurb = data.nice_size( dataset.get_size() ) else: dataset.peek = 'file does not exist' dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ): if not dataset.dataset.purged: try: parsed_data = simplejson.load(open(dataset.file_name)) # dataset.peek = simplejson.dumps(data, sort_keys=True, indent=4) dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte ) dataset.blurb = '%d sections' % len(parsed_data['sections']) except Exception, e: dataset.peek = 'Not FQTOC file' dataset.blurb = 'Not FQTOC file'
def set_peek( self, dataset ): """Set the peek and blurb text""" if not dataset.dataset.purged: dataset.peek = data.get_file_peek( dataset.file_name ) dataset.blurb = util.commaify( str( data.get_line_count( dataset.file_name ) ) ) + " rows" #i don't think set_meta should not be called here, it should be called separately self.set_meta( dataset ) else: dataset.peek = 'file does not exist' dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, line_count=None ): if not dataset.dataset.purged: dataset.peek = data.get_file_peek( dataset.file_name ) if line_count is None: dataset.blurb = data.nice_size( dataset.get_size() ) else: dataset.blurb = "%s lines, 454 Quality score file" % util.commaify( str( line_count ) ) else: dataset.peek = 'file does not exist' dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, line_count=None ): """Set the peek and blurb text""" if not dataset.dataset.purged: dataset.peek = data.get_file_peek( dataset.file_name ) if line_count is None: dataset.blurb = "%s regions" % util.commaify( str( data.get_line_count( dataset.file_name ) ) ) else: dataset.blurb = "%s regions" % util.commaify( str( line_count ) ) else: dataset.peek = 'file does not exist' dataset.blurb = 'file purged from disk'
def set_peek(self, dataset, is_multi_byte=False): if not dataset.dataset.purged: self.sniff(dataset.file_name) if (self.no_mols[1] == '1'): dataset.blurb = "1 molecule" else: dataset.blurb = "%s molecules" % self.no_mols[1] dataset.peek = data.get_file_peek(dataset.file_name, is_multi_byte=is_multi_byte) else: dataset.peek = 'file does not exist' dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, is_multi_byte=False ): if not dataset.dataset.purged: # The file must exist on disk for the get_file_peek() method dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte ) if dataset.metadata.blocks: dataset.blurb = "%s blocks" % util.commaify( str( dataset.metadata.blocks ) ) else: # Number of blocks is not known ( this should not happen ), and auto-detect is # needed to set metadata dataset.blurb = "? blocks" else: dataset.peek = 'file does not exist' dataset.blurb = 'file purged from disk'
def set_peek( self, dataset, line_count=None, is_multi_byte=False ): """Set the peek and blurb text""" if not dataset.dataset.purged: dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte ) if line_count is None: # See if line_count is stored in the metadata if dataset.metadata.data_lines: dataset.blurb = "%s regions" % util.commaify( str( dataset.metadata.data_lines ) ) else: # Number of lines is not known ( this should not happen ), and auto-detect is # needed to set metadata dataset.blurb = "? regions" else: dataset.blurb = "%s regions" % util.commaify( str( line_count ) ) else: dataset.peek = 'file does not exist' dataset.blurb = 'file purged from disk'
def set_peek(self, dataset): dataset.peek = data.get_file_peek(dataset.file_name) ## dataset.peek = self.make_html_table( dataset.peek ) dataset.blurb = util.commaify( str(data.get_line_count(dataset.file_name))) + " regions" self.set_meta(dataset)
def set_peek( self, dataset ): dataset.peek = data.get_file_peek( dataset.file_name ) ## dataset.peek = self.make_html_table( dataset.peek ) dataset.blurb = util.commaify( str( data.get_line_count( dataset.file_name ) ) ) + " regions" self.set_meta( dataset )