Python fasta_to_fasta Beispiele

Beispiel #1

Datei: fasta.py Projekt: bgruening/EDeN

def fasta_to_sequence(input, **options):
    """Load sequences tuples from fasta file."""
    lines = fasta_to_fasta(input, **options)
    for line in lines:
        header = line
        seq = lines.next()
        yield header, seq

Beispiel #2

Datei: fasta.py Projekt: bgruening/EDeN

def fasta_to_sequence(input, **options):
    """Load sequences tuples from fasta file."""
    lines = fasta_to_fasta(input, **options)
    for line in lines:
        header = line
        seq = lines.next()
        yield header, seq

Beispiel #3

Datei: fasta.py Projekt: BackofenLab/Graphlearn_long_range

def fasta_to_sequence(input, **options):
    """Load sequences tuples from fasta file."""

    lines = fasta_to_fasta(input, **options)
    for line in lines:
        header = line
        seq = lines.next()
        if len(seq) == 0:
            raise Exception('ERROR: empty sequence')
        yield header, seq