def test_calc_cutoff():
target = 14
expected = 2
got = f.calc_cutoff(target, partial_capture)
eq_(expected, got)
def test_calc_cutoff():
target = 14
expected = 2
got = f.calc_cutoff(target, partial_capture)
eq_(expected, got)
def test_calc_cutoff_bad_coverage():
target = 23 # > 22 available
expected_message = 'Not enough reads available for desired genome coverage (bases needed=23 > actual=22)'
with pytest.raises(f.GenomeCoverageError) as ctx:
f.calc_cutoff(target, partial_capture)
assert expected_message == str(ctx.value)
def test_calc_cutoff_bad_coverage():
target = 23 # > 22 available
expected_message = 'Not enough reads available for desired genome coverage (bases needed=23 > actual=22)'
with assert_raises(f.GenomeCoverageError) as ctx:
f.calc_cutoff(target, partial_capture)
eq_(expected_message, ctx.exception.message)
def test_calc_cutoff_bad_coverage():
target = 23 # > 22 available
expected_message = 'Not enough reads available for desired genome coverage (bases needed=23 > actual=22)'
with pytest.raises(f.GenomeCoverageError) as ctx:
f.calc_cutoff(target, partial_capture)
assert expected_message == str(ctx.value)