Python calc_cutoff Examples

Example #1

File: test_functional.py Project: minqing1/FALCON

def test_calc_cutoff():
    target = 14
    expected = 2
    got = f.calc_cutoff(target, partial_capture)
    eq_(expected, got)

Example #2

def test_calc_cutoff():
    target = 14
    expected = 2
    got = f.calc_cutoff(target, partial_capture)
    eq_(expected, got)

Example #3

File: test_functional.py Project: pythseq/FALCON-1

def test_calc_cutoff_bad_coverage():
    target = 23  # > 22 available
    expected_message = 'Not enough reads available for desired genome coverage (bases needed=23 > actual=22)'
    with pytest.raises(f.GenomeCoverageError) as ctx:
        f.calc_cutoff(target, partial_capture)
    assert expected_message == str(ctx.value)

Example #4

def test_calc_cutoff_bad_coverage():
    target = 23  # > 22 available
    expected_message = 'Not enough reads available for desired genome coverage (bases needed=23 > actual=22)'
    with assert_raises(f.GenomeCoverageError) as ctx:
        f.calc_cutoff(target, partial_capture)
    eq_(expected_message, ctx.exception.message)

Example #5

File: test_functional.py Project: PacificBiosciences/FALCON

def test_calc_cutoff_bad_coverage():
    target = 23  # > 22 available
    expected_message = 'Not enough reads available for desired genome coverage (bases needed=23 > actual=22)'
    with pytest.raises(f.GenomeCoverageError) as ctx:
        f.calc_cutoff(target, partial_capture)
    assert expected_message == str(ctx.value)