def run(self):
if not os.path.isdir(self.repeat_dir):
os.mkdir(self.repeat_dir)
logger.info("Performing repeat analysis")
repeat.analyse_repeats(self.args, Job.run_params, self.in_assembly,
self.repeat_dir, self.log_file,
self.args.asm_config)
def run(self):
super(JobRepeat, self).run()
if not os.path.isdir(self.work_dir):
os.mkdir(self.work_dir)
logger.info("Building and resolving repeat graph")
repeat.analyse_repeats(self.args, Job.run_params, self.disjointigs,
self.work_dir, self.log_file,
self.args.asm_config)