def run(self): if not os.path.isdir(self.repeat_dir): os.mkdir(self.repeat_dir) logger.info("Performing repeat analysis") repeat.analyse_repeats(self.args, Job.run_params, self.in_assembly, self.repeat_dir, self.log_file, self.args.asm_config)
def run(self): super(JobRepeat, self).run() if not os.path.isdir(self.work_dir): os.mkdir(self.work_dir) logger.info("Building and resolving repeat graph") repeat.analyse_repeats(self.args, Job.run_params, self.disjointigs, self.work_dir, self.log_file, self.args.asm_config)