ei_net.setVelocityCurrentInput_e()
# place cells
if o.pcON:
# activate place cells (including start place cells))
ei_net.setPlaceCells(distribution='box_outline', boxSize=border_dim)
elif o.spcON:
# activate start place cells only
ei_net.setStartPlaceCells(ConstPosInputs(0, 0))
else:
pass
# border cells
if o.bcON:
# create the border cells
ei_net.create_border_cells(borders=borders, N_per_border=o.bcNum)
# connect border cells according to chosen method
if o.bcConnMethod == "line":
ei_net.connect_border_cells_line_method(o.bc_conn_weight)
elif o.bcConnMethod == "place":
ei_net.connect_border_cells_modified_place_cell_method(
o.bc_conn_weight)
elif o.bcConnMethod == "predef":
ei_net.connect_border_cells_predefined_weights(o.bc_conn_weight)
elif o.bcConnMethod == "none":
pass
try:
ei_net.simulate(o.time, printTime=o.printTime)
except NESTError as e:
print("Simulation interrupted. Message: {0}".format(str(e)))
# activate place cells (including start place cells))
ei_net.setPlaceCells()
# start place cells
if o.spcON:
# activate start place cells only
ei_net.setStartPlaceCells(pos)
# border cells
if o.bcON:
# create the border cells - "crosshair"
arena_borders = [
((0.0 + x_off[trial_idx], 90.0), (0.0 + x_off[trial_idx], -90.0)),
((-90.0, 0.0 + y_off[trial_idx]), (90.0, 0.0 + y_off[trial_idx]))
]
ei_net.create_border_cells(borders=arena_borders,
N_per_border=o.bcNum,
posIn=pos)
# connect border cells according to chosen method
if o.bcConnMethod == "line":
ei_net.connect_border_cells_line_method(o.bc_conn_weight)
elif o.bcConnMethod == "place":
ei_net.connect_border_cells_modified_place_cell_method(
o.bc_conn_weight)
elif o.bcConnMethod == "none":
pass
try:
ei_net.simulate(o.time, printTime=o.printTime)
except NESTError as e:
print("Simulation interrupted. Message: {0}".format(str(e)))
print("Not saving the data. Trying to clean up if possible...")
# turn velocity inputs on
ei_net.setVelocityCurrentInput_e()
# place cells
if o.pcON:
# activate place cells (including start place cells))
ei_net.setPlaceCells()
else:
# activate start place cells only
ei_net.setStartPlaceCells(ConstPosInputs(0, 0))
# border cells
if o.bcON:
# create a set of border cells defining a mesh over the arena
lines = create_mesh((-180.0,180.0), (180.0,-180.0), 6.0, 6.0)
ei_net.create_border_cells(lines, N_per_border=1)
# connect border cells according to chosen method
if o.border_cell_connect_method == "line":
ei_net.connect_border_cells_line_method(o.bc_conn_weight)
elif o.border_cell_connect_method == "none":
pass
try:
ei_net.simulate(o.time, printTime=o.printTime)
except NESTError as e:
print("Simulation interrupted. Message: {0}".format(str(e)))
print("Not saving the data. Trying to clean up if possible...")
stop = True
ei_net.endSimulation()
# get simulation data
sim_data = ei_net.getAllData()
