# turn velocity inputs on
if o.velON:
ei_net.setVelocityCurrentInput_e()
# animal position inputs (constant)
pos = ConstPosInputs(0 + x_off[trial_idx], 0 + y_off[trial_idx])
# place cells
if o.pcON:
# activate place cells (including start place cells))
ei_net.setPlaceCells()
# start place cells
if o.spcON:
# activate start place cells only
ei_net.setStartPlaceCells(pos)
# border cells
if o.bcON:
# create the border cells - "crosshair"
arena_borders = [
((0.0 + x_off[trial_idx], 90.0), (0.0 + x_off[trial_idx], -90.0)),
((-90.0, 0.0 + y_off[trial_idx]), (90.0, 0.0 + y_off[trial_idx]))
]
ei_net.create_border_cells(borders=arena_borders,
N_per_border=o.bcNum,
posIn=pos)
# connect border cells according to chosen method
if o.bcConnMethod == "line":
ei_net.connect_border_cells_line_method(o.bc_conn_weight)
elif o.bcConnMethod == "place":
ei_net = BasicGridCellNetwork(
o,
simulationOpts=None,
nrec_spikes=(nrec_spikes_e, nrec_spikes_i),
stateRecParams=(stateMonParams, stateMonParams),
rec_spikes_probabilistic=o.rec_spikes_probabilistic)
if o.velON and not o.constantPosition:
ei_net.setVelocityCurrentInput_e()
if o.pcON:
# This also sets the start PCs
posIn = ConstPosInputs(0, 0) if o.constantPosition else None
ei_net.setPlaceCells(posIn=posIn)
else:
# Here the start PCs must be set explicitly
ei_net.setStartPlaceCells(ConstPosInputs(0, 0))
if o.ipc_ON:
if o.constantPosition:
raise RuntimeError("Place cells connected to I cells cannot be "
"used when the constantPosition parameter is "
"ON.")
ei_net.setIPlaceCells()
d['net_params'] = ei_net.getNetParams() # Common settings will stay
d.flush()
try:
ei_net.simulate(o.time, printTime=o.printTime)
except NESTError as e:
print("Simulation interrupted. Message: {0}".format(str(e)))
print("Trying to save the simulated data if possible...")
d['invalidated'] = 1
ei_net = BasicGridCellNetwork(o, simulationOpts=None,
nrec_spikes=(nrec_spikes_e, nrec_spikes_i),
stateRecParams=(stateMonParams,
stateMonParams),
rec_spikes_probabilistic=o.rec_spikes_probabilistic)
if o.velON and not o.constantPosition:
ei_net.setVelocityCurrentInput_e()
if o.pcON:
# This also sets the start PCs
posIn = ConstPosInputs(0, 0) if o.constantPosition else None
ei_net.setPlaceCells(posIn=posIn)
else:
# Here the start PCs must be set explicitly
ei_net.setStartPlaceCells(ConstPosInputs(0, 0))
if o.ipc_ON:
if o.constantPosition:
raise RuntimeError("Place cells connected to I cells cannot be "
"used when the constantPosition parameter is "
"ON.")
ei_net.setIPlaceCells()
d['net_params'] = ei_net.getNetParams() # Common settings will stay
d.flush()
try:
ei_net.simulate(o.time, printTime=o.printTime)
except NESTError as e:
print("Simulation interrupted. Message: {0}".format(str(e)))
print("Trying to save the simulated data if possible...")
