def test_gsea(gseaGCT, gseaCLS, geneGMT):
# Only tests of the command runs successfully,
# doesnt't check the image
tmpdir= TemporaryDirectory(dir="tests")
gsea(data=gseaGCT, gene_sets=geneGMT, cls=gseaCLS,
outdir=tmpdir.name, permutation_type='phenotype',
permutation_num=10)
tmpdir.cleanup()
def test_gsea(gseaGCT, gseaCLS, geneGMT):
# Only tests of the command runs successfully,
# doesnt't check the image
tmpdir = TemporaryDirectory(dir="tests")
gsea(gseaGCT, geneGMT, gseaCLS, tmpdir.name)
tmpdir.cleanup()