コード例 #1
0
def test_gsea(gseaGCT, gseaCLS, geneGMT):
    # Only tests of the command runs successfully,
    # doesnt't check the image
    tmpdir= TemporaryDirectory(dir="tests")
    gsea(data=gseaGCT, gene_sets=geneGMT, cls=gseaCLS,
         outdir=tmpdir.name, permutation_type='phenotype',
         permutation_num=10)
    tmpdir.cleanup()
コード例 #2
0
ファイル: test_commands.py プロジェクト: ranikay/GSEApy
def test_gsea(gseaGCT, gseaCLS, geneGMT):
    # Only tests of the command runs successfully,
    # doesnt't check the image
    tmpdir = TemporaryDirectory(dir="tests")
    gsea(gseaGCT, geneGMT, gseaCLS, tmpdir.name)
    tmpdir.cleanup()