def test_does_the_sequence_have_sensible_characters(self): validate_fasta = ValidateFastaAlignment( 'gubbins/tests/data/sequence_with_odd_chars.fa') self.assertFalse( validate_fasta.does_each_sequence_have_a_name_and_genomic_data()) self.assertFalse(validate_fasta.is_input_fasta_file_valid())
def test_does_each_sequence_have_a_name(self): validate_fasta = ValidateFastaAlignment( 'gubbins/tests/data/sequence_without_a_name.fa') self.assertFalse( validate_fasta.does_each_sequence_have_a_name_and_genomic_data()) self.assertFalse(validate_fasta.is_input_fasta_file_valid())
def test_does_the_sequence_have_sensible_characters(self): validate_fasta = ValidateFastaAlignment('gubbins/tests/data/sequence_with_odd_chars.fa') self.assertFalse(validate_fasta.does_each_sequence_have_a_name_and_genomic_data()) self.assertFalse(validate_fasta.is_input_fasta_file_valid())
def test_does_each_sequence_have_a_name(self): validate_fasta = ValidateFastaAlignment( os.path.join(data_dir, 'sequence_without_a_name.fa')) self.assertFalse( validate_fasta.does_each_sequence_have_a_name_and_genomic_data()) self.assertFalse(validate_fasta.is_input_fasta_file_valid())
def test_does_each_sequence_have_a_name(self): validate_fasta = ValidateFastaAlignment('gubbins/tests/data/sequence_without_a_name.fa') self.assertFalse(validate_fasta.does_each_sequence_have_a_name_and_genomic_data()) self.assertFalse(validate_fasta.is_input_fasta_file_valid())