def main():
regions = settings.REGIONS # Get regions from config
clean_results = {}
if regions[0] == "global": # If they want you to clean global resources
print("Cleaning Global Resources.")
helpers.set_session() # Set a blank session for global resources
clean_results["global"] = clean_account_globally()
print("Finished Cleaning Globally.")
regions.pop(0)
for region in regions:
print("Cleaning In {0}.".format(region))
helpers.set_session(region) # Set current region
clean_results[region] = clean_account_regionally() # Clean current regions resources
print("Finished Cleaning In {0}.".format(region))
helpers.save_results(clean_results)
def run_session(options, args):
"""
Runs the training simulation given a parsed set of options and its leftover
elements.
Returns a dictionary of {key: value} pairings with information on the results
of the simulation.
"""
# leftover args are class names for training methodology
if len(args) == 0:
# default
learners_to_run = ['Learner']
else:
learners_to_run = parse_learners(args)
options.learner_class_names = learners_to_run
options.learner_classes = load_modules(options.learner_class_names)
n = len(learners_to_run)
options.video = options.train_tick > 0
learner_histories = {}
taught_learners = {}
learner_scores = {}
# train each class and store results
for learner, learner_class in options.learner_classes.iteritems():
hist, learned = session(learner, options)
learner_histories[learner] = hist
taught_learners[learner] = learned
learner_scores[learner] = get_score(
hist, options.test_iters if options.test_iters != 0 else min(
100, options.train_iters))
# TODO : Here, we have access to each learner's training history as we
# as the trained learner. Should do stuff with it.
# create a plot class for each learner
plots = [
Plots(learner_histories[learner], learner)
for learner in options.learner_class_names
]
# generate plots for each learner
learner_plots = {}
for plot in plots:
learner_plots[plot.learner] = list(plot.plot_score_by_epoch())
dist = plot.plot_distribution(options.test_iters)
if dist is not None:
learner_plots[plot.learner].append(dist)
# save results if possible
if not helpers.save_results(options.learner_class_names, taught_learners,
learner_histories, learner_scores,
learner_plots, options.outfile):
print "Failed to save results."
def start(self):
delimiter()
print(f"Starting experiment {self.experiments_name}...")
delimiter()
for fold in self.folds:
for target in self.targets:
print(f'Processing fold: {fold} and target: {target}')
delimiter()
train_input_indices, train_output, val_input_indices, val_output, test_input_indices, test_output = self.data_frame.\
get_train_val_test_input_output(target, fold, self.validation_set_percentage, self.random_state, self.targets_type, self.prediction_type)
model, models_identifier, parameters_dict = self.get_the_best_model(target, fold, train_input_indices, train_output, val_input_indices, val_output)
print(f'Apply best model to test for {target} on fold {fold}.')
test_loader = self.data_frame.create_minibatches(test_input_indices, test_output, 1, self.cuda_device, model.convert_input)
regularization = get_regularization(parameters_dict[self.REGULARIZATION])
alpha = parameters_dict[self.ALPHA]
test_loss, test_logits, test_true = apply(self.debugger, model, self.loss_function, test_loader, regularization, alpha, self.cuda_device)
results = model.models_metrics(test_logits, test_true)
self.metrics_handler.update_test_results(models_identifier, results)
self.metrics_handler.print_test_results(test_loss, results)
helpers.save_results(test_logits, test_true, helpers.get_predictions_file_name(self.output_directory, models_identifier, target, fold, self.run_identificator), self.prediction_type)
self.models_performance_saver.flush_data()
print(f"+++ Finished with training and testing model for {target} on fold {fold}. +++")
delimiter()
delimiter()
print_line = "\rEpoch: {} Train loss: {:.6f} Val accuracy: {:.4f}% Loss: {:.6f} Minutes: {:.2f}{}".format(
epoch + 1, loss_train, acc_val * 100, loss_val, epoch_time,
" (improved)" if loss_val < best_loss_val else "")
print(print_line)
sys.__stdout__.write(print_line)
# And save the model if it improved:
if loss_val < best_loss_val:
save_path = saver.save(sess, checkpoint_path)
best_loss_val = loss_val
# ## Plot loss and accuracy
# In[56]:
save_results(validation_accuracy_values, training_loss_values_final,
validation_loss_values, model_name)
# ## Run network with test data
# In[57]:
batch_size = 100
test_images = test_images_original - mean
test_images /= std
test_labels = test_labels_original
n_iterations_test = len(test_images) // batch_size
checkpoint_path = model_name
def read_csv(source):
#for reading unicode
#f = codecs.open(source, 'r', encoding='utf-8')
city_options = City.objects.filter(tag="ann_arbor")
print len(city_options)
if not len(city_options):
city = City()
city.name = "Ann Arbor"
city.tag = to_tag(city.name)
city.save()
else:
city = city_options[0]
print city
#TODO:
#setup FeedInfo item
#and also create a Source item
permit_sub_types = []
status_types = []
building_nums = []
applicants = []
managers = []
cache_file = "%s.json" % city.tag
cache_destination = os.path.join(os.path.dirname(source), cache_file)
#keep a local copy of data we've processed...
#this should help with subsequent calls
#to make sure we don't need to duplicate calls to remote geolocation APIs:
local_cache = load_json(cache_destination, create=True)
if not local_cache.has_key('buildings'):
local_cache['buildings'] = {}
if not local_cache.has_key('parcels'):
local_cache['parcels'] = {}
locations = {}
for key, value in local_cache['buildings'].items():
locations[key] = Location(value)
#geocoder helper:
geo = Geo()
#with open('eggs.csv', 'rb') as csvfile:
with codecs.open(source, 'rb', encoding='utf-8') as csvfile:
#reader = csv.reader(csvfile, delimiter=' ', quotechar='|')
reader = csv.reader(csvfile)
#just print the first row:
print '>, <'.join(reader.next())
count = 0
for row in reader:
count += 1
#could exit out early here, if needed
if count > 10:
pass
print row
#type of building (eg: sf attached, duplex, etc)
permit_id = row[0]
#should always be "RENTAL" (don't need to track this one)
permit_type = row[1]
if not permit_type == "RENTAL" and not permit_type == "MECHANICAL":
raise ValueError, "Unexpected permit type: %s in row: %s" % (
permit_type, row)
sub_type = row[2]
#can use this to filter out non-rental or obsolete entries
#don't need to track otherwise:
status = row[3]
parcel_id = row[4]
address = row[5]
#should be fixed per source:
city = row[6]
if not ((city.lower() == 'ann arbor') or (city == '')):
raise ValueError, "Unexpected city: %s" % (city)
sqft = row[7]
number_of_buildings = row[8]
applicant_name = row[9]
number_of_stories = row[10]
number_of_units = row[11]
if (not status in ['EXPIRED', 'CLOSED']) and (permit_type
in ['RENTAL']):
#check if we've started processing any results for this row
#if local_cache['buildings'].has_key(address.upper()):
# local_cache_cur = local_cache['buildings'][address.upper()]
#else:
# local_cache_cur = {}
if locations.has_key(address.upper()):
location = locations[address.upper()]
else:
location = Location()
#do some geocoding, as needed:
search = "%s, Ann Arbor MI" % address.upper()
for source in location.sources:
geo.lookup(search, source, location)
location.address_alt = search
locations[address.upper()] = location
#local_cache['buildings'][address.upper()] = local_cache_cur
#and check if a previous building object in the db exists
#CREATE A NEW BUILDING OBJECT HERE
#cur_building = Building()
bldg = Building()
bldg.type = sub_type
#back it up for later
local_cache['buildings'] = {}
for key, value in locations.items():
local_cache['buildings'][key] = value.to_dict()
save_json(cache_destination, local_cache)
#exit()
#THE FOLLOWING ARE FOR INFORMATIONAL PURPOSES ONLY
#(to see what data is available)
if not status in status_types:
#print "adding: %s" % sub_type
status_types.append(status)
if not sub_type in permit_sub_types:
#print "adding: %s" % sub_type
permit_sub_types.append(sub_type)
building_num = row[8]
if not building_num in building_nums:
#print "adding: %s" % sub_type
building_nums.append(building_num)
applicant = row[9]
if (re.search('MGMT', applicant) or re.search('REALTY', applicant)
or re.search('PROPERTIES', applicant)
or re.search('MANAGEMENT', applicant)
or re.search('GROUP', applicant)
or re.search('LLC', applicant)
or re.search('L.L.C.', applicant)
or re.search('INC', applicant)):
if not applicant in managers:
managers.append(applicant)
else:
if not applicant in applicants:
applicants.append(applicant)
#print ', '.join(row)
#print
## print permit_sub_types
print status_types
print building_nums
save_results(locations)
def read_csv(source_csv, city_name, city_tag):
city_options = City.objects.filter(tag=city_tag)
print "Number of cities available: %s" % len(city_options)
if not len(city_options):
raise ValueError, "CITY NOT FOUND! run make_cities.py first"
## city = City()
## city.name = city_name
## city.tag = to_tag(city.name)
## city.save()
else:
city = city_options[0]
print city
feed_date = "2013-07-31"
feeds = FeedInfo.objects.filter(city=city).filter(added=feed_date)
if feeds.exists():
feed = feeds[0]
print "Already had feed: %s, %s" % (feed.city, feed.added)
else:
feed = FeedInfo()
feed.city = city
feed.added = feed_date
feed.version = "0.1"
feed.save()
print "Created new feed: %s" % feed.city.name
people = Person.objects.filter(name="Blank")
if people.exists():
person = people[0]
print "Already had person: %s" % (person.name)
else:
person = Person()
person.name = "Blank"
person.save()
print "Created new person: %s" % person.name
sources = Source.objects.filter(feed=feed)
if sources.exists():
feed_source = sources[0]
print "Already had source: %s, %s" % (feed_source.feed.city, feed_source.feed.added)
else:
feed_source = Source()
feed_source.feed = feed
feed_source.person = person
feed_source.save()
print "Created new source: %s" % feed_source.feed.city.name
cache_file = "%s.json" % city.tag
cache_destination = os.path.join(os.path.dirname(source_csv), cache_file)
#keep a local copy of data we've processed...
#this should help with subsequent calls
#to make sure we don't need to duplicate calls to remote geolocation APIs:
local_cache = load_json(cache_destination, create=True)
if not local_cache.has_key('buildings'):
local_cache['buildings'] = {}
if not local_cache.has_key('parcels'):
local_cache['parcels'] = {}
locations = {}
for key, value in local_cache['buildings'].items():
locations[key] = Location(value)
#geocoder helper:
geo = Geo()
skips = 0
#with codecs.open(source_csv, 'rb', encoding='utf-8') as csvfile:
with open(source_csv) as csvfile:
#reader = csv.reader(csvfile, delimiter=' ', quotechar='|')
#reader = csv.reader(csvfile)
#reader = unicodecsv.UnicodeReader(csvfile, encoding='utf-8')
reader = unicode_csv_reader(csvfile)
#just print the first row:
print '>, <'.join(reader.next())
count = 0
for row in reader:
count += 1
print "Looking at row: %s" % count
#could exit out early here, if needed
if count > 1000:
#exit()
pass
address = row[0]
#need to fix the number being at the end of the address
parts = address.split(',')
anumber = parts[-1]
parts = parts[:-1]
street = ",".join(parts)
address = "%s %s" % (anumber, street)
invoice_number = row[1]
bldg_id = row[1]
print bldg_id
#this is where owner is stored
invoice_note = row[6]
print invoice_note
if re.match('Sent to:', invoice_note):
print "changing invoice note from: %s" % invoice_note
invoice_note = invoice_note[8:]
print "to: %s" % invoice_note
else:
#raise ValueError, "invoice note does not start with Sent to"
print "!!!!!invoice note does not start with Sent to!!!!!"
print ""
print ""
no_units = row[12]
## #should always be "RENTAL" (don't need to track this one)
## permit_type = row[1]
## if not permit_type == "RENTAL" and not permit_type == "MECHANICAL":
## raise ValueError, "Unexpected permit type: %s in row: %s" % (
## permit_type, row)
## bldg_type = row[2]
## #can use this to filter out non-rental or obsolete entries
## #don't need to track otherwise:
## status = row[3]
## parcel_id = row[4]
## #should be fixed per source:
## ss_city = row[6]
## bldg_sf = row[7]
## no_bldgs = row[8]
## applicant_name = row[9]
## no_stories = row[10]
## no_units = row[11]
## if not ( (ss_city.lower() == city_name.lower()) or (ss_city == '') ):
## raise ValueError, "Unexpected city: %s" % (ss_city)
## sqft = row[7]
## number_of_buildings = row[8]
## applicant_name = row[9]
## number_of_stories = row[10]
## number_of_units = row[11]
#check if this is one we want to skip
if conversions.has_key(address.upper()):
address = conversions[address.upper()]
## if (not status in ['EXPIRED', 'CLOSED']) and (permit_type in ['RENTAL']):
#make sure it's not one we're skipping:
if not address:
print "SKIPPING ITEM: %s" % row[1]
skips += 1
else:
#check if we've started processing any results for this row
if locations.has_key(address.upper()):
location = locations[address.upper()]
else:
location = Location()
#temporarily just want to look at google again
#location.sources = ["google"]
#location.sources = ["google", "bing", "usgeo", "geonames", "openmq"]
location.sources = ["google", "bing"]
#do some geocoding, as needed:
search = "%s, %s, %s" % (address.upper(), city_name, city.state)
any_updated = False
for geo_source in location.sources:
update = geo.lookup(search, geo_source, location, force=True)
#update = geo.lookup(search, geo_source, location, force=False)
if update:
any_updated = True
location.sources = ["google", "bing", "usgeo", "geonames", "openmq", "mq"]
#this is the case for brand new searches
#(which are updated in a different sense)
if not hasattr(location, "address_alt") or not location.address_alt:
any_updated = True
location.address_alt = search
#location.bldg_units = bldg_units
#location.units_bdrms = units_bdrms
locations[address.upper()] = location
#handle the database storage
bldg = make_building(location, bldg_id, city, feed_source, no_units=no_units)
if invoice_note:
(person, bldg_person) = make_person(invoice_note, bldg, "Permit Applicant")
if any_updated:
#back it up for later
#enable this when downloading GPS coordinates...
#the rest of the time it slows things down
local_cache['buildings'] = {}
for key, value in locations.items():
local_cache['buildings'][key] = value.to_dict()
save_json(cache_destination, local_cache)
print
destination = '%s.tsv' % city_tag
save_results(locations, destination)
def read_csv(source):
#for reading unicode
#f = codecs.open(source, 'r', encoding='utf-8')
city_options = City.objects.filter(tag="ann_arbor")
print len(city_options)
if not len(city_options):
city = City()
city.name = "Ann Arbor"
city.tag = to_tag(city.name)
city.save()
else:
city = city_options[0]
print city
#TODO:
#setup FeedInfo item
#and also create a Source item
permit_sub_types = []
status_types = []
building_nums = []
applicants = []
managers = []
cache_file = "%s.json" % city.tag
cache_destination = os.path.join(os.path.dirname(source), cache_file)
#keep a local copy of data we've processed...
#this should help with subsequent calls
#to make sure we don't need to duplicate calls to remote geolocation APIs:
local_cache = load_json(cache_destination, create=True)
if not local_cache.has_key('buildings'):
local_cache['buildings'] = {}
if not local_cache.has_key('parcels'):
local_cache['parcels'] = {}
locations = {}
for key, value in local_cache['buildings'].items():
locations[key] = Location(value)
#geocoder helper:
geo = Geo()
#with open('eggs.csv', 'rb') as csvfile:
with codecs.open(source, 'rb', encoding='utf-8') as csvfile:
#reader = csv.reader(csvfile, delimiter=' ', quotechar='|')
reader = csv.reader(csvfile)
#just print the first row:
print '>, <'.join(reader.next())
count = 0
for row in reader:
count += 1
#could exit out early here, if needed
if count > 10:
pass
print row
#type of building (eg: sf attached, duplex, etc)
permit_id = row[0]
#should always be "RENTAL" (don't need to track this one)
permit_type = row[1]
if not permit_type == "RENTAL" and not permit_type == "MECHANICAL":
raise ValueError, "Unexpected permit type: %s in row: %s" % (
permit_type, row)
sub_type = row[2]
#can use this to filter out non-rental or obsolete entries
#don't need to track otherwise:
status = row[3]
parcel_id = row[4]
address = row[5]
#should be fixed per source:
city = row[6]
if not ( (city.lower() == 'ann arbor') or (city == '') ):
raise ValueError, "Unexpected city: %s" % (city)
sqft = row[7]
number_of_buildings = row[8]
applicant_name = row[9]
number_of_stories = row[10]
number_of_units = row[11]
if (not status in ['EXPIRED', 'CLOSED']) and (permit_type in ['RENTAL']):
#check if we've started processing any results for this row
#if local_cache['buildings'].has_key(address.upper()):
# local_cache_cur = local_cache['buildings'][address.upper()]
#else:
# local_cache_cur = {}
if locations.has_key(address.upper()):
location = locations[address.upper()]
else:
location = Location()
#do some geocoding, as needed:
search = "%s, Ann Arbor MI" % address.upper()
for source in location.sources:
geo.lookup(search, source, location)
location.address_alt = search
locations[address.upper()] = location
#local_cache['buildings'][address.upper()] = local_cache_cur
#and check if a previous building object in the db exists
#CREATE A NEW BUILDING OBJECT HERE
#cur_building = Building()
bldg = Building()
bldg.type = sub_type
#back it up for later
local_cache['buildings'] = {}
for key, value in locations.items():
local_cache['buildings'][key] = value.to_dict()
save_json(cache_destination, local_cache)
#exit()
#THE FOLLOWING ARE FOR INFORMATIONAL PURPOSES ONLY
#(to see what data is available)
if not status in status_types:
#print "adding: %s" % sub_type
status_types.append(status)
if not sub_type in permit_sub_types:
#print "adding: %s" % sub_type
permit_sub_types.append(sub_type)
building_num = row[8]
if not building_num in building_nums:
#print "adding: %s" % sub_type
building_nums.append(building_num)
applicant = row[9]
if ( re.search('MGMT', applicant) or
re.search('REALTY', applicant) or
re.search('PROPERTIES', applicant) or
re.search('MANAGEMENT', applicant) or
re.search('GROUP', applicant) or
re.search('LLC', applicant) or
re.search('L.L.C.', applicant) or
re.search('INC', applicant)
):
if not applicant in managers:
managers.append(applicant)
else:
if not applicant in applicants:
applicants.append(applicant)
#print ', '.join(row)
#print
## print permit_sub_types
print status_types
print building_nums
save_results(locations)
frequencies = calculate_frequency(EOD,
sampling_frequency,
estimated_frequency=f_estimate,
crossing_threshold=threshold,
temporal_threshold=0.05,
method='median',
ascending=False)
cv = '{:.2e}'.format(np.std(frequencies) / np.mean(frequencies))
print(cv)
print(np.mean(frequencies))
file_name = helpers.path_to_name(file)
frequency_info = [frequencies, cv, threshold]
helpers.save_results(frequency_info, fish, file_name, 'frequency')
npy_files = helpers.get_npy_files(fish, helpers.SAVE_PATH, 'frequency')
frequencies = []
for i in range(len(npy_files)):
[frequency, cv, threshold] = helpers.load_npy(npy_files[i])
frequency = frequency.tolist()
frequencies.extend(frequency)
size = np.size(frequencies) / len(npy_files)
markers = [size * i for i in range(len(npy_files))]
plt.plot(frequencies, '.')
frequencies = calculate_frequency(EOD,
sampling_frequency,
estimated_frequency=f_estimate,
crossing_threshold=threshold,
temporal_threshold=0.05,
method='median',
ascending=True)
cv = '{:.2e}'.format(np.std(frequencies) / np.mean(frequencies))
print(cv)
print(np.mean(frequencies))
file_name = helpers.path_to_name(file)
frequency_info = [frequencies, cv, threshold]
helpers.save_results(frequency_info, fish, file_name, 'frequency')
fft = [xf, power]
helpers.save_results(fft, fish, file_name + '_fft', 'fft')
for index in lowrez:
file = mat_files[index]
print(file)
raw_data = helpers.load_mat(file)
signal_length = len(raw_data)
EOD = helpers.cleaning_data(raw_data)
sampling_frequency = 500000
threshold = np.max(EOD) / 3
f_estimate = 800
frequencies = calculate_frequency(EOD,
sampling_frequency,
estimated_frequency=f_estimate,
def read_csv(source_csv, city_name, city_tag):
city_options = City.objects.filter(tag=city_tag)
print "Number of cities available: %s" % len(city_options)
if not len(city_options):
raise ValueError, "CITY NOT FOUND! run make_cities.py first"
## city = City()
## city.name = city_name
## city.tag = to_tag(city.name)
## city.save()
else:
city = city_options[0]
print city
feed_date = "2013-07-31"
feeds = FeedInfo.objects.filter(city=city).filter(added=feed_date)
if feeds.exists():
feed = feeds[0]
print "Already had feed: %s, %s" % (feed.city, feed.added)
else:
feed = FeedInfo()
feed.city = city
feed.added = feed_date
feed.version = "0.1"
feed.save()
print "Created new feed: %s" % feed.city.name
people = Person.objects.filter(name="Blank")
if people.exists():
person = people[0]
print "Already had person: %s" % (person.name)
else:
person = Person()
person.name = "Blank"
person.save()
print "Created new person: %s" % person.name
sources = Source.objects.filter(feed=feed)
if sources.exists():
feed_source = sources[0]
print "Already had source: %s, %s" % (feed_source.feed.city,
feed_source.feed.added)
else:
feed_source = Source()
feed_source.feed = feed
feed_source.person = person
feed_source.save()
print "Created new source: %s" % feed_source.feed.city.name
cache_file = "%s.json" % city.tag
cache_destination = os.path.join(os.path.dirname(source_csv), cache_file)
#keep a local copy of data we've processed...
#this should help with subsequent calls
#to make sure we don't need to duplicate calls to remote geolocation APIs:
local_cache = load_json(cache_destination, create=True)
if not local_cache.has_key('buildings'):
local_cache['buildings'] = {}
if not local_cache.has_key('parcels'):
local_cache['parcels'] = {}
locations = {}
for key, value in local_cache['buildings'].items():
locations[key] = Location(value)
#geocoder helper:
geo = Geo()
skips = 0
#with codecs.open(source_csv, 'rb', encoding='utf-8') as csvfile:
with open(source_csv) as csvfile:
#reader = csv.reader(csvfile, delimiter=' ', quotechar='|')
#reader = csv.reader(csvfile)
#reader = unicodecsv.UnicodeReader(csvfile, encoding='utf-8')
reader = unicode_csv_reader(csvfile)
#just print the first row:
print '>, <'.join(reader.next())
count = 0
for row in reader:
count += 1
print "Looking at row: %s" % count
#could exit out early here, if needed
if count > 1000:
#exit()
pass
address = row[0]
#need to fix the number being at the end of the address
parts = address.split(',')
anumber = parts[-1]
parts = parts[:-1]
street = ",".join(parts)
address = "%s %s" % (anumber, street)
invoice_number = row[1]
bldg_id = row[1]
print bldg_id
#this is where owner is stored
invoice_note = row[6]
print invoice_note
if re.match('Sent to:', invoice_note):
print "changing invoice note from: %s" % invoice_note
invoice_note = invoice_note[8:]
print "to: %s" % invoice_note
else:
#raise ValueError, "invoice note does not start with Sent to"
print "!!!!!invoice note does not start with Sent to!!!!!"
print ""
print ""
no_units = row[12]
## #should always be "RENTAL" (don't need to track this one)
## permit_type = row[1]
## if not permit_type == "RENTAL" and not permit_type == "MECHANICAL":
## raise ValueError, "Unexpected permit type: %s in row: %s" % (
## permit_type, row)
## bldg_type = row[2]
## #can use this to filter out non-rental or obsolete entries
## #don't need to track otherwise:
## status = row[3]
## parcel_id = row[4]
## #should be fixed per source:
## ss_city = row[6]
## bldg_sf = row[7]
## no_bldgs = row[8]
## applicant_name = row[9]
## no_stories = row[10]
## no_units = row[11]
## if not ( (ss_city.lower() == city_name.lower()) or (ss_city == '') ):
## raise ValueError, "Unexpected city: %s" % (ss_city)
## sqft = row[7]
## number_of_buildings = row[8]
## applicant_name = row[9]
## number_of_stories = row[10]
## number_of_units = row[11]
#check if this is one we want to skip
if conversions.has_key(address.upper()):
address = conversions[address.upper()]
## if (not status in ['EXPIRED', 'CLOSED']) and (permit_type in ['RENTAL']):
#make sure it's not one we're skipping:
if not address:
print "SKIPPING ITEM: %s" % row[1]
skips += 1
else:
#check if we've started processing any results for this row
if locations.has_key(address.upper()):
location = locations[address.upper()]
else:
location = Location()
#temporarily just want to look at google again
#location.sources = ["google"]
#location.sources = ["google", "bing", "usgeo", "geonames", "openmq"]
location.sources = ["google", "bing"]
#do some geocoding, as needed:
search = "%s, %s, %s" % (address.upper(), city_name, city.state)
any_updated = False
for geo_source in location.sources:
update = geo.lookup(search, geo_source, location, force=True)
#update = geo.lookup(search, geo_source, location, force=False)
if update:
any_updated = True
location.sources = [
"google", "bing", "usgeo", "geonames", "openmq", "mq"
]
#this is the case for brand new searches
#(which are updated in a different sense)
if not hasattr(location,
"address_alt") or not location.address_alt:
any_updated = True
location.address_alt = search
#location.bldg_units = bldg_units
#location.units_bdrms = units_bdrms
locations[address.upper()] = location
#handle the database storage
bldg = make_building(location,
bldg_id,
city,
feed_source,
no_units=no_units)
if invoice_note:
(person, bldg_person) = make_person(invoice_note, bldg,
"Permit Applicant")
if any_updated:
#back it up for later
#enable this when downloading GPS coordinates...
#the rest of the time it slows things down
local_cache['buildings'] = {}
for key, value in locations.items():
local_cache['buildings'][key] = value.to_dict()
save_json(cache_destination, local_cache)
print
destination = '%s.tsv' % city_tag
save_results(locations, destination)
def read_csv(source_csv, city_name, city_tag):
city_options = City.objects.filter(tag=city_tag)
print "Number of cities available: %s" % len(city_options)
if not len(city_options):
raise ValueError, "CITY NOT FOUND! run make_cities.py first"
## city = City()
## city.name = city_name
## city.tag = to_tag(city.name)
## city.save()
else:
city = city_options[0]
print city
feed_date = "2013-10-16"
feeds = FeedInfo.objects.filter(city=city).filter(added=feed_date)
if feeds.exists():
feed = feeds[0]
print "Already had feed: %s, %s" % (feed.city, feed.added)
else:
feed = FeedInfo()
feed.city = city
feed.added = feed_date
feed.version = "0.1"
feed.save()
print "Created new feed: %s" % feed.city.name
people = Person.objects.filter(name="Blank")
if people.exists():
person = people[0]
print "Already had person: %s" % (person.name)
else:
person = Person()
person.name = "Blank"
person.save()
print "Created new person: %s" % person.name
sources = Source.objects.filter(feed=feed)
if sources.exists():
feed_source = sources[0]
print "Already had source: %s, %s" % (feed_source.feed.city, feed_source.feed.added)
else:
feed_source = Source()
feed_source.feed = feed
feed_source.person = person
feed_source.save()
print "Created new source: %s" % feed_source.feed.city.name
cache_file = "%s.json" % city.tag
cache_destination = os.path.join(os.path.dirname(source_csv), cache_file)
#keep a local copy of data we've processed...
#this should help with subsequent calls
#to make sure we don't need to duplicate calls to remote geolocation APIs:
local_cache = load_json(cache_destination, create=True)
if not local_cache.has_key('buildings'):
local_cache['buildings'] = {}
if not local_cache.has_key('parcels'):
local_cache['parcels'] = {}
locations = {}
for key, value in local_cache['buildings'].items():
locations[key] = Location(value)
#geocoder helper:
geo = Geo()
skips = 0
#with codecs.open(source_csv, 'rb', encoding='utf-8') as csvfile:
with open(source_csv) as csvfile:
#reader = csv.reader(csvfile, delimiter=' ', quotechar='|')
#reader = csv.reader(csvfile)
#reader = unicodecsv.UnicodeReader(csvfile, encoding='utf-8')
reader = unicode_csv_reader(csvfile)
#just print the first row:
print '>, <'.join(reader.next())
count = 0
#want to randomize the order... distribute options more evenly
#print len(reader)
#exit()
#in order to randomize, should randomize the order in the csv
for row in reader:
count += 1
print "Looking at row: %s" % count
#could exit out early here, if needed
if count > 10:
#exit()
pass
print row
address = row[0]
## no_units = row[12]
#can pass this in as bldg_id to make_building
#that gets used for parcel too
parcel_id = row[1]
bldg_id = parcel_id
street_num = row[2]
street_dir = row[3]
street_name = row[4]
street_sfx = row[5]
#eg building number
qualifier_pre = row[6]
#eg "UNIT" or "APT"
qualifier_post = row[7]
apt_num = row[8]
#skip row9 (in/out... whatever that means)
zip_code = row[10]
#skip row11, assessor id
#skip row12, address num
#skip row13, x
#skip row14, y
#xcoord == lng
lng = row[15]
lat = row[16]
#entry floor number: (named 'z' in sheet)
floor = row[17]
#skip row18, strcid... not sure
#skip row19, parent
#skip row20, app_
#skip row21, hteloc
zone = row[22]
bldg_type = row[23]
#number of buildings
bldg_num = row[24]
no_units = row[25]
#skip row[26], inspection type
#skip row27, app number
#skip row28, date received
#skip row29, application type
#skip row30, ownerid
#skip row31, operator id
#skip row32, agent_id
#skip row33, mail to
central_heat = row[34]
if central_heat == 'Y':
central_heat = True
else:
central_heat = False
#heat mechanism? heat mechanic??? not sure
heat_mech = row[35]
#skip row36, agent id (2)
#skip row37, agent last name
#skip row38 agent first name
#skip row39 agent middle initial
#skip row40, agent title
#skip row41, business name
#could be owner, could be agent
owner_name = row[42]
owner_address1 = row[43]
owner_address2 = row[44]
owner_city = row[45]
owner_state = row[46]
owner_zip = row[47]
#address = " ".join([street_num, street_dir, street_name, street_sfx, qualifier_pre, qualifier_post, apt_num])
address_main = " ".join([street_num, street_dir, street_name, street_sfx, qualifier_pre])
address_main = address_main.strip()
#get rid of any double spaces
address_main = address_main.replace(" ", " ")
apt_main = " ".join([qualifier_post, apt_num])
apt_main = apt_main.strip()
address = address_main
print address
owner_address = ", ".join([owner_address1, owner_address2, owner_city, owner_state, owner_zip])
## #should always be "RENTAL" (don't need to track this one)
## permit_type = row[1]
## if not permit_type == "RENTAL" and not permit_type == "MECHANICAL":
## raise ValueError, "Unexpected permit type: %s in row: %s" % (
## permit_type, row)
## bldg_type = row[2]
## #can use this to filter out non-rental or obsolete entries
## #don't need to track otherwise:
## status = row[3]
## parcel_id = row[4]
## #should be fixed per source:
## ss_city = row[6]
## bldg_sf = row[7]
## no_bldgs = row[8]
## applicant_name = row[9]
## no_stories = row[10]
## no_units = row[11]
## sqft = row[7]
## number_of_buildings = row[8]
## applicant_name = row[9]
## number_of_stories = row[10]
## number_of_units = row[11]
#check if this is one we want to skip
if conversions.has_key(address.upper()):
address = conversions[address.upper()]
## if (not status in ['EXPIRED', 'CLOSED']) and (permit_type in ['RENTAL']):
#make sure it's not one we're skipping:
if not address:
print "SKIPPING ITEM: %s" % row[1]
skips += 1
else:
#check if we've started processing any results for this row
if locations.has_key(address.upper()):
location = locations[address.upper()]
else:
location = Location()
#temporarily just want to look at google again
#location.sources = ["google"]
#location.sources = ["google", "bing"]
#location.sources = ["google", "bing", "usgeo", "geonames", "openmq"]
#skip geocoding for columbia
location.sources = []
#do some geocoding, as needed:
search = "%s, %s, %s" % (address.upper(), city_name, city.state)
any_updated = False
for geo_source in location.sources:
update = geo.lookup(search, geo_source, location, force=True)
#update = geo.lookup(search, geo_source, location, force=False)
if update:
any_updated = True
location.sources = ['csv', "google", "bing", "usgeo", "geonames", "openmq", "mq"]
#manually add data from csv here:
result = []
result.append({'place': address, 'lat': lat, 'lng': lng})
setattr(location, 'csv', result)
#this is the case for brand new searches
#(which are updated in a different sense)
if not hasattr(location, "address_alt") or not location.address_alt:
any_updated = True
location.address_alt = search
#location.bldg_units = bldg_units
#location.units_bdrms = units_bdrms
locations[address.upper()] = location
#handle the database storage
bldg = make_building(location, bldg_id, city, feed_source, no_units=no_units, bldg_type=bldg_type)
if apt_main:
unit = make_unit(apt_main, bldg)
(person, bldg_person) = make_person(owner_name, bldg, "Agent", address=owner_address)
if any_updated:
#back it up for later
#enable this when downloading GPS coordinates...
#the rest of the time it slows things down
local_cache['buildings'] = {}
for key, value in locations.items():
local_cache['buildings'][key] = value.to_dict()
save_json(cache_destination, local_cache)
print
#exit()
destination = '%s.tsv' % city_tag
save_results(locations, destination)
def read_csv(source_csv, city_name, city_tag):
city_options = City.objects.filter(tag=city_tag)
print "Number of cities available: %s" % len(city_options)
if not len(city_options):
raise ValueError, "CITY NOT FOUND! run make_cities.py first"
## city = City()
## city.name = city_name
## city.tag = to_tag(city.name)
## city.save()
else:
city = city_options[0]
print city
feed_date = "2013-10-16"
feeds = FeedInfo.objects.filter(city=city).filter(added=feed_date)
if feeds.exists():
feed = feeds[0]
print "Already had feed: %s, %s" % (feed.city, feed.added)
else:
feed = FeedInfo()
feed.city = city
feed.added = feed_date
feed.version = "0.1"
feed.save()
print "Created new feed: %s" % feed.city.name
people = Person.objects.filter(name="Blank")
if people.exists():
person = people[0]
print "Already had person: %s" % (person.name)
else:
person = Person()
person.name = "Blank"
person.save()
print "Created new person: %s" % person.name
sources = Source.objects.filter(feed=feed)
if sources.exists():
feed_source = sources[0]
print "Already had source: %s, %s" % (feed_source.feed.city,
feed_source.feed.added)
else:
feed_source = Source()
feed_source.feed = feed
feed_source.person = person
feed_source.save()
print "Created new source: %s" % feed_source.feed.city.name
cache_file = "%s.json" % city.tag
cache_destination = os.path.join(os.path.dirname(source_csv), cache_file)
#keep a local copy of data we've processed...
#this should help with subsequent calls
#to make sure we don't need to duplicate calls to remote geolocation APIs:
local_cache = load_json(cache_destination, create=True)
if not local_cache.has_key('buildings'):
local_cache['buildings'] = {}
if not local_cache.has_key('parcels'):
local_cache['parcels'] = {}
locations = {}
for key, value in local_cache['buildings'].items():
locations[key] = Location(value)
#geocoder helper:
geo = Geo()
skips = 0
#with codecs.open(source_csv, 'rb', encoding='utf-8') as csvfile:
with open(source_csv) as csvfile:
#reader = csv.reader(csvfile, delimiter=' ', quotechar='|')
#reader = csv.reader(csvfile)
#reader = unicodecsv.UnicodeReader(csvfile, encoding='utf-8')
reader = unicode_csv_reader(csvfile)
#just print the first row:
print '>, <'.join(reader.next())
count = 0
#want to randomize the order... distribute options more evenly
#print len(reader)
#exit()
#in order to randomize, should randomize the order in the csv
for row in reader:
count += 1
print "Looking at row: %s" % count
#could exit out early here, if needed
if count > 10:
#exit()
pass
print row
address = row[0]
## no_units = row[12]
#can pass this in as bldg_id to make_building
#that gets used for parcel too
parcel_id = row[1]
bldg_id = parcel_id
street_num = row[2]
street_dir = row[3]
street_name = row[4]
street_sfx = row[5]
#eg building number
qualifier_pre = row[6]
#eg "UNIT" or "APT"
qualifier_post = row[7]
apt_num = row[8]
#skip row9 (in/out... whatever that means)
zip_code = row[10]
#skip row11, assessor id
#skip row12, address num
#skip row13, x
#skip row14, y
#xcoord == lng
lng = row[15]
lat = row[16]
#entry floor number: (named 'z' in sheet)
floor = row[17]
#skip row18, strcid... not sure
#skip row19, parent
#skip row20, app_
#skip row21, hteloc
zone = row[22]
bldg_type = row[23]
#number of buildings
bldg_num = row[24]
no_units = row[25]
#skip row[26], inspection type
#skip row27, app number
#skip row28, date received
#skip row29, application type
#skip row30, ownerid
#skip row31, operator id
#skip row32, agent_id
#skip row33, mail to
central_heat = row[34]
if central_heat == 'Y':
central_heat = True
else:
central_heat = False
#heat mechanism? heat mechanic??? not sure
heat_mech = row[35]
#skip row36, agent id (2)
#skip row37, agent last name
#skip row38 agent first name
#skip row39 agent middle initial
#skip row40, agent title
#skip row41, business name
#could be owner, could be agent
owner_name = row[42]
owner_address1 = row[43]
owner_address2 = row[44]
owner_city = row[45]
owner_state = row[46]
owner_zip = row[47]
#address = " ".join([street_num, street_dir, street_name, street_sfx, qualifier_pre, qualifier_post, apt_num])
address_main = " ".join([
street_num, street_dir, street_name, street_sfx, qualifier_pre
])
address_main = address_main.strip()
#get rid of any double spaces
address_main = address_main.replace(" ", " ")
apt_main = " ".join([qualifier_post, apt_num])
apt_main = apt_main.strip()
address = address_main
print address
owner_address = ", ".join([
owner_address1, owner_address2, owner_city, owner_state,
owner_zip
])
## #should always be "RENTAL" (don't need to track this one)
## permit_type = row[1]
## if not permit_type == "RENTAL" and not permit_type == "MECHANICAL":
## raise ValueError, "Unexpected permit type: %s in row: %s" % (
## permit_type, row)
## bldg_type = row[2]
## #can use this to filter out non-rental or obsolete entries
## #don't need to track otherwise:
## status = row[3]
## parcel_id = row[4]
## #should be fixed per source:
## ss_city = row[6]
## bldg_sf = row[7]
## no_bldgs = row[8]
## applicant_name = row[9]
## no_stories = row[10]
## no_units = row[11]
## sqft = row[7]
## number_of_buildings = row[8]
## applicant_name = row[9]
## number_of_stories = row[10]
## number_of_units = row[11]
#check if this is one we want to skip
if conversions.has_key(address.upper()):
address = conversions[address.upper()]
## if (not status in ['EXPIRED', 'CLOSED']) and (permit_type in ['RENTAL']):
#make sure it's not one we're skipping:
if not address:
print "SKIPPING ITEM: %s" % row[1]
skips += 1
else:
#check if we've started processing any results for this row
if locations.has_key(address.upper()):
location = locations[address.upper()]
else:
location = Location()
#temporarily just want to look at google again
#location.sources = ["google"]
#location.sources = ["google", "bing"]
#location.sources = ["google", "bing", "usgeo", "geonames", "openmq"]
#skip geocoding for columbia
location.sources = []
#do some geocoding, as needed:
search = "%s, %s, %s" % (address.upper(), city_name, city.state)
any_updated = False
for geo_source in location.sources:
update = geo.lookup(search, geo_source, location, force=True)
#update = geo.lookup(search, geo_source, location, force=False)
if update:
any_updated = True
location.sources = [
'csv', "google", "bing", "usgeo", "geonames", "openmq", "mq"
]
#manually add data from csv here:
result = []
result.append({'place': address, 'lat': lat, 'lng': lng})
setattr(location, 'csv', result)
#this is the case for brand new searches
#(which are updated in a different sense)
if not hasattr(location,
"address_alt") or not location.address_alt:
any_updated = True
location.address_alt = search
#location.bldg_units = bldg_units
#location.units_bdrms = units_bdrms
locations[address.upper()] = location
#handle the database storage
bldg = make_building(location,
bldg_id,
city,
feed_source,
no_units=no_units,
bldg_type=bldg_type)
if apt_main:
unit = make_unit(apt_main, bldg)
(person, bldg_person) = make_person(owner_name,
bldg,
"Agent",
address=owner_address)
if any_updated:
#back it up for later
#enable this when downloading GPS coordinates...
#the rest of the time it slows things down
local_cache['buildings'] = {}
for key, value in locations.items():
local_cache['buildings'][key] = value.to_dict()
save_json(cache_destination, local_cache)
print
#exit()
destination = '%s.tsv' % city_tag
save_results(locations, destination)
import numpy as np
fish_names = helpers.get_all_fish(helpers.RECORDING_PATH8)
indexes = []
fish = fish_names[1]
for fish in tqdm(fish_names):
npy_files = helpers.get_high_frequency_files(fish, helpers.RECORDING_PATH8)
file = npy_files[0]
for file in tqdm(npy_files):
data = helpers.load_npy(file)
data = np.array(data, dtype='int')
sampling_frequency = helpers.NPY_FREQUENCY
EOD = data - np.mean(data)
t_max = int(len(data) / helpers.NPY_FREQUENCY)
time_array = np.arange(0, t_max - 1 / sampling_frequency,
1 / sampling_frequency) # IMPLEMENT IN HELPERS
threshold = max(data) / 2
fest = calculate_frequency(EOD[::20],
sampling_frequency / 20,
method='spectral')
frequencies = calculate_frequency(EOD,
sampling_frequency,
estimated_frequency=fest[0],
crossing_threshold=threshold / 2,
method='median',
ascending=True)
cv = '{:.2e}'.format(np.std(frequencies) / np.mean(frequencies))
file_name = helpers.path_to_name(file)
helpers.save_results(frequencies, fish, file_name)
def read_csv(source_csv):
city_options = City.objects.filter(tag="bloomington_in")
print "Number of cities available: %s" % len(city_options)
if not len(city_options):
raise ValueError, "CITY NOT FOUND! run make_cities.py first"
## city = City()
## city.name = "Bloomington"
## city.tag = to_tag(city.name)
## city.save()
else:
city = city_options[0]
print city
feed_date = "2013-08-29"
feeds = FeedInfo.objects.filter(city=city).filter(added=feed_date)
if feeds.exists():
feed = feeds[0]
print "Already had feed: %s, %s" % (feed.city, feed.added)
else:
feed = FeedInfo()
feed.city = city
feed.added = feed_date
feed.version = "0.1"
feed.save()
print "Created new feed: %s" % feed.city
people = Person.objects.filter(name="Blank")
if people.exists():
person = people[0]
print "Already had person: %s" % (person.name)
else:
person = Person()
person.name = "Blank"
person.save()
print "Created new person: %s" % person.name
sources = Source.objects.filter(feed=feed)
if sources.exists():
feed_source = sources[0]
print "Already had source: %s, %s" % (feed_source.feed.city, feed_source.feed.added)
else:
feed_source = Source()
feed_source.feed = feed
feed_source.person = person
feed_source.save()
print "Created new source: %s" % feed_source.feed.city
cache_file = "%s.json" % city.tag
cache_destination = os.path.join(os.path.dirname(source_csv), cache_file)
# keep a local copy of data we've processed...
# this should help with subsequent calls
# to make sure we don't need to duplicate calls to remote geolocation APIs:
local_cache = load_json(cache_destination, create=True)
if not local_cache.has_key("buildings"):
local_cache["buildings"] = {}
if not local_cache.has_key("parcels"):
local_cache["parcels"] = {}
locations = {}
for key, value in local_cache["buildings"].items():
locations[key] = Location(value)
# geocoder helper:
geo = Geo()
skips = 0
with codecs.open(source_csv, "rb", encoding="utf-8") as csvfile:
# reader = csv.reader(csvfile, delimiter=' ', quotechar='|')
reader = csv.reader(csvfile)
# just print the first row:
print ">, <".join(reader.next())
count = 0
for row in reader:
count += 1
print "Looking at row: %s" % count
# could exit out early here, if needed
if count > 1000:
# exit()
pass
bldg_id = row[0]
print bldg_id
address = row[1]
print address
owner = row[2]
# skip this:
ownder_contact = row[3]
agent = row[4]
bldg_units = row[9]
print bldg_units
units_bdrms = row[10]
print units_bdrms
# check if this is one we want to skip
if conversions.has_key(address.upper()):
address = conversions[address.upper()]
# make sure it's not one we're skipping:
if not address:
print "SKIPPING ITEM: %s" % row[1]
skips += 1
else:
if locations.has_key(address.upper()):
location = locations[address.upper()]
else:
location = Location()
# temporarily just want to look at google again
location.sources = ["google"]
# do some geocoding, as needed:
search = "%s, Bloomington IN" % address.upper()
any_updated = False
for geo_source in location.sources:
update = geo.lookup(search, geo_source, location, force=True)
if update:
any_updated = True
location.sources = ["google", "bing", "usgeo", "geonames", "openmq", "mq"]
if not hasattr(location, "address_alt") or not location.address_alt:
any_updated = True
location.address_alt = search
location.bldg_units = bldg_units
location.units_bdrms = units_bdrms
locations[address.upper()] = location
# handle the database storage
bldg = make_building(location, bldg_id, city, feed_source)
# owner_details = parse_person(owner)
if owner:
result = special_cases(owner)
if result:
(owner_name, owner_address) = result
else:
(owner_name, owner_address, owner_phone, remainder) = parse_person(owner)
## print "owner name: %s" % owner_name
## print "owner address: %s" % owner_address
## print ""
if owner_name:
(person, bldg_person) = make_person(owner_name, bldg, "Owner", address=owner_address)
if agent and agent != "No Agent":
# agent_details = parse_person(agent)
(agent_name, agent_address, agent_phone, remainder) = parse_person(agent)
## print "agent name: %s" % agent_name
## print "agent address: %s" % agent_address
## print ""
if agent_name:
(person, bldg_person) = make_person(agent_name, bldg, "Agent", address=agent_address, city=city)
if any_updated:
# back it up for later
# enable this when downloading GPS coordinates...
# the rest of the time it slows things down
local_cache["buildings"] = {}
for key, value in locations.items():
local_cache["buildings"][key] = value.to_dict()
save_json(cache_destination, local_cache)
print
save_results(locations, "bloomington-filtered.tsv")
import helpers
import numpy as np
fish_names = helpers.get_all_fish(helpers.RECORDING_PATH16)
indexes = []
fish = fish_names[6]
sampling_frequency = 500000
step = 12 # 15 seconds
for fish in (fish_names):
mat_files = helpers.get_mat_files(fish, helpers.RECORDING_PATH16)
file = mat_files[19]
for file in mat_files:
raw_data = helpers.load_mat(file)
EOD = helpers.cleaning_data(raw_data)
step_size = np.size(EOD) / step
i = 0
for i in range(0, int(step)):
sub_data = EOD[int(i * step_size):int((i + 1) * step_size)]
sub_sampling = 1
sub_EOD = sub_data[::sub_sampling]
[xf, power] = helpers.compute_fft(sub_EOD, 1, sampling_frequency)
file_name = helpers.path_to_name(file)
fft = [xf, power]
helpers.save_results(fft, fish,
file_name + '_fft_' + '{0:03}'.format(i),
'fft')
# asdf = ["a_1", "b_2", "c_10"]
# asdf.sort(key=lambda x: int(x.split("_")[-1]))
