def test_pad(self):
read = Read(seq=self.read.seq[8+2:8+13-2],
pos=50)
read.cigar = [(0, 9)]
trim_short_cigars(self.read, match_len_min=5, trim_pad=2)
self.assertEqual(read, self.read)
def test_nopad(self):
read = Read(seq=self.read.seq[8:8+13],
pos=48)
read.cigar = [(0, 13)]
trim_short_cigars(self.read, match_len_min=5, trim_pad=0)
self.assertEqual(read, self.read)
def test_pad(self):
read = Read(seq=self.read.seq[8 + 2:8 + 13 - 2], pos=50)
read.cigar = [(0, 9)]
trim_short_cigars(self.read, match_len_min=5, trim_pad=2)
self.assertEqual(read, self.read)
def test_nopad(self):
read = Read(seq=self.read.seq[8:8 + 13], pos=48)
read.cigar = [(0, 13)]
trim_short_cigars(self.read, match_len_min=5, trim_pad=0)
self.assertEqual(read, self.read)
