def test_pad(self): read = Read(seq=self.read.seq[8+2:8+13-2], pos=50) read.cigar = [(0, 9)] trim_short_cigars(self.read, match_len_min=5, trim_pad=2) self.assertEqual(read, self.read)
def test_nopad(self): read = Read(seq=self.read.seq[8:8+13], pos=48) read.cigar = [(0, 13)] trim_short_cigars(self.read, match_len_min=5, trim_pad=0) self.assertEqual(read, self.read)
def test_pad(self): read = Read(seq=self.read.seq[8 + 2:8 + 13 - 2], pos=50) read.cigar = [(0, 9)] trim_short_cigars(self.read, match_len_min=5, trim_pad=2) self.assertEqual(read, self.read)
def test_nopad(self): read = Read(seq=self.read.seq[8:8 + 13], pos=48) read.cigar = [(0, 13)] trim_short_cigars(self.read, match_len_min=5, trim_pad=0) self.assertEqual(read, self.read)