import logging
from pathlib import Path
from hyo2.abc.lib.logging import set_logging
from hyo2.abc.lib.testing_paths import TestingPaths
from hyo2.openbst.lib.openbst import OpenBST
set_logging(ns_list=[
"hyo2.openbst",
])
logger = logging.getLogger(__name__)
# Set up project
testing = TestingPaths(root_folder=Path(__file__).parents[2].resolve())
bst = OpenBST(prj_name="default", force_new=True)
bst.prj.open_project_folder()
# add file
raw_path = testing.download_data_folder().joinpath('reson',
'20190321_185116.s7k')
bst.prj.add_raw(raw_path)
raw_path = testing.download_data_folder().joinpath('reson',
'20190730_144835.s7k')
bst.prj.add_raw(raw_path)
# import raws via project health check
bst.prj.check_health()
# remove a raw
bst.prj.remove_raw(raw_path)
import time
import logging
from PySide2 import QtWidgets
from hyo2.abc.app.qt_progress import QtProgress
from hyo2.abc.lib.logging import set_logging
logger = logging.getLogger(__name__)
set_logging(ns_list=["hyo2.abc"])
app = QtWidgets.QApplication([])
widget = QtWidgets.QWidget()
widget.show()
progress = QtProgress(parent=widget)
progress.start(title='Test Bar', text='Doing stuff')
time.sleep(.1)
progress.update(value=30, text='Updating')
time.sleep(.1)
print("canceled? %s" % progress.canceled)
progress.end()
import logging
from PySide2 import QtWidgets
from hyo2.abc.app.qt_progress import QtProgress
from hyo2.soundspeedmanager import app_info
from hyo2.soundspeed.soundspeed import SoundSpeedLibrary
from hyo2.soundspeedmanager.qt_callbacks import QtCallbacks
from hyo2.abc.lib.logging import set_logging
ns_list = [
"hyo2.soundspeed", "hyo2.soundspeedmanager", "hyo2.soundspeedsettings"
]
set_logging(ns_list=ns_list)
logger = logging.getLogger(__name__)
# examples of test position:
# - offshore Portsmouth: 43.026480, -70.318824
# - Indian Ocean: -19.1, 74.16
# - middle of Africa (in land): 18.2648113, 16.1761115
switch = "LEOFS" # WOA09 or WOA13 or RTOFS or GoMOFS or LEOFS or LHOFS
app = QtWidgets.QApplication([]) # PySide stuff (start)
mw = QtWidgets.QMainWindow()
mw.show()
lib = SoundSpeedLibrary(progress=QtProgress(parent=mw),
callbacks=QtCallbacks(parent=mw))
import traceback
from pathlib import Path
from PySide2 import QtCore, QtWidgets
import logging
from hyo2.abc.app.app_style import AppStyle
from hyo2.abc.lib.logging import set_logging
from hyo2.qax.app.gui_settings import GuiSettings
from hyo2.qax.app.mainwin import MainWin
from hyo2.qax.lib.config import QaxConfig
from hyo2.qax.lib.plugin import QaxPlugins
logger = logging.getLogger(__name__)
set_logging(ns_list=[
"hyo2.qax",
])
def qt_custom_handler(error_type: QtCore.QtMsgType,
error_context: QtCore.QMessageLogContext, message: str):
if "Cannot read property 'id' of null" in message:
return
if "The event loop is already running" in message:
return
logger.info("Qt error: %s [%s] -> %s" %
(error_type, error_context, message))
for line in traceback.format_stack():
logger.debug("- %s" % line.strip())
import logging
import sys
from PySide2 import QtWidgets
from hyo2.abc.lib.logging import set_logging
from hyo2.kng.sis.app.mainwin import MainWin
logger = logging.getLogger(__name__)
set_logging(ns_list=[
"hyo2.kng",
])
def gui():
"""create the main windows and the event loop"""
app = QtWidgets.QApplication(sys.argv)
main = MainWin()
main.show()
sys.exit(app.exec_())
import sys
import traceback
import logging
from PySide2 import QtCore, QtWidgets
from hyo2.abc.lib.logging import set_logging
from hyo2.abc.app.app_style import AppStyle
set_logging(ns_list=["hyo2.abc", "hyo2.soundspeed", "hyo2.soundspeedmanager", "hyo2.soundspeedsettings",
"hyo2.surveydatamonitor"])
logger = logging.getLogger(__name__)
def qt_custom_handler(error_type: QtCore.QtMsgType, error_context: QtCore.QMessageLogContext, message: str):
logger.info("Qt error: %s [%s, %s:%s:%d, v.%s] -> %s"
% (error_type, error_context.category, error_context.file, error_context.function,
error_context.line, error_context.version, message))
for line in traceback.format_stack():
logger.debug("- %s" % line.strip())
QtCore.qInstallMessageHandler(qt_custom_handler)
def gui():
"""Create the application and show the Sound Speed Manager gui"""
from hyo2.soundspeedmanager.mainwin import MainWin
def setUp(self):
set_logging(ns_list=["test_logging"])
self.logger = logging.getLogger(__name__)
import sys
import traceback
import logging
from PySide2 import QtCore, QtWidgets
from hyo2.abc.lib.logging import set_logging
from hyo2.abc.app.app_style import AppStyle
set_logging(ns_list=["hyo2.abc", "hyo2.soundspeed", "hyo2.soundspeedmanager", "hyo2.soundspeedsettings"])
logger = logging.getLogger(__name__)
def qt_custom_handler(error_type, error_context, message):
logger.info("Qt error: %s [%s] -> %s" % (str(error_type), str(error_context), message))
for line in traceback.format_stack():
logger.debug("- %s" % line.strip())
QtCore.qInstallMessageHandler(qt_custom_handler)
def gui():
"""Run the Sound Speed Settings gui"""
from hyo2.soundspeedsettings.mainwin import MainWin
from hyo2.soundspeed.soundspeed import SoundSpeedLibrary
app = QtWidgets.QApplication(sys.argv)
app.setStyleSheet(AppStyle.load_stylesheet())
import os
import numpy as np
import logging
from hyo2.abc.lib.logging import set_logging
from hyo2.qc.survey.anomaly.anomaly_detector_v1_thresholds import ThresholdsV1
logger = logging.getLogger(__name__)
set_logging(ns_list=["hyo2.ca", ])
np.random.seed(0)
arr_sz = 1000
array = np.random.rand(arr_sz, arr_sz) * 150.0
array[5:8, 5:7] = np.nan
array[15:18, 25:27] = np.nan
# array[int(array.shape[0]*.2), int(array.shape[1]*.1)] = np.nan
# array[int(array.shape[0]*.3), int(array.shape[1]*.1)] = np.nan
# array[int(array.shape[0]*.1), int(array.shape[1]*.7)] = np.nan
prev = None
for j in range(2):
# array = ThresholdsV1.nan_gaussian_filter(array)
ths = ThresholdsV1()
ths.calculate(array)
# ths.plot()
