def test_export_to_cyjs(): ca = CAGAssembler(statements) ca.make_model() cyjs = ca.export_to_cytoscapejs() assert len(cyjs['nodes']) == 2 assert len(cyjs['edges']) == 1 ca.generate_jupyter_js()
def test_eidos_to_cag(): stmts = __get_stmts_from_remote_jsonld() ca = CAGAssembler() # Make sure these don't error ca.add_statements(stmts) ca.make_model() ca.export_to_cytoscapejs() return
def test_eidos_to_cag(): stmts = __get_stmts_from_remote_jsonld() ca = CAGAssembler() # Make sure these don't error ca.add_statements(stmts) ca.make_model() ca.export_to_cytoscapejs() return
def display_delphi(statements): from delphi import app ca = CAGAssembler(statements) cag = ca.make_model() cyjs = ca.export_to_cytoscapejs() cyjs_str = json.dumps(cyjs) app.state.statements = statements app.state.CAG = cag app.state.elementsJSON = cyjs app.state.elementsJSONforJinja = cyjs_str app.run()
def test_assemble_no_evidence(): ca = CAGAssembler([Influence(Event(Concept('a')), Event(Concept('b')))]) ca.make_model() ca.generate_jupyter_js()
def test_assemble_influence(): ca = CAGAssembler(statements) CAG = ca.make_model() assert len(CAG.nodes()) == 2 assert len(CAG.edges()) == 1
def make_mitre_tsv(stmts, fname): ca = CAGAssembler(stmts) ca.make_model() ca.print_tsv(fname)