class RCMRD_LandDegrDialogTest(unittest.TestCase):
    """Test dialog works."""

    def setUp(self):
        """Runs before each test."""
        self.dialog = RCMRD_LandDegrDialog(None)

    def tearDown(self):
        """Runs after each test."""
        self.dialog = None

    def test_dialog_ok(self):
        """Test we can click OK."""

        button = self.dialog.button_box.button(QDialogButtonBox.Ok)
        button.click()
        result = self.dialog.result()
        self.assertEqual(result, QDialog.Accepted)

    def test_dialog_cancel(self):
        """Test we can click cancel."""
        button = self.dialog.button_box.button(QDialogButtonBox.Cancel)
        button.click()
        result = self.dialog.result()
        self.assertEqual(result, QDialog.Rejected)
Beispiel #2
0
    def __init__(self, iface):
        """Constructor.

        :param iface: An interface instance that will be passed to this class
            which provides the hook by which you can manipulate the QGIS
            application at run time.
        :type iface: QgsInterface
        """
        # Save reference to the QGIS interface
        self.iface = iface
        # initialize plugin directory
        self.plugin_dir = os.path.dirname(__file__)
        # initialize locale
        locale = QSettings().value('locale/userLocale')[0:2]
        locale_path = os.path.join(
            self.plugin_dir,
            'i18n',
            'RCMRD_LandDegr_{}.qm'.format(locale))

        if os.path.exists(locale_path):
            self.translator = QTranslator()
            self.translator.load(locale_path)

            if qVersion() > '4.3.3':
                QCoreApplication.installTranslator(self.translator)

        # Create the dialog (after translation) and keep reference
        self.dlg = RCMRD_LandDegrDialog()

        # Declare instance attributes
        self.actions = []
        self.menu = self.tr(u'&RCRMD: land degradation')
        # TODO: We are going to let the user set this up in a future iteration
        self.toolbar = self.iface.addToolBar(u'RCMRD: land degradation')
        self.toolbar.setObjectName(u'RCMRD: land degradation')

        # Declare user instance variables
        self.roiDefinitions = None
        self.roiDefinitions = [{"name":"IGAD", "roiXY":[21.8094, -4.6775, 51.417, 22.227]},
            {"name":"Djibouti", "roiXY":[41.749110148,10.929824931, 43.418711785,12.707912502]},
            {"name":"Eritrea", "roiXY":[36.423647095,12.360021871, 43.123871290,18.004828192]},
            {"name":"Ethiopia", "roiXY":[32.989799845,3.403333435, 47.979169149,14.879532166]},
            {"name":"Kenya", "roiXY":[33.890468384,-4.677504165, 41.885019165,5.030375823]},
            {"name":"Sudan", "roiXY":[42.647246541,7.996515605, 48.93911199991,11.498928127]},
            {"name":"South Sudan", "roiXY":[24.121555623,3.490201518, 35.920835409,12.216154684]},
            {"name":"Somali Land", "roiXY":[42.647246541,7.996515605, 48.93911199991,11.498928127]},
            {"name":"Somalia", "roiXY":[40.965385376,-1.69628316498, 51.417037811,11.989118646]},
            {"name":"Uganda", "roiXY":[29.548459513,-1.475205994, 35.006472615,4.219691875]}]
        
        #self.selectedRoi = None
        self.raster_list = [] # list all files open in QGis, contains file objects
        self.dictReproj = None # dictionary: 'input filename' -> reprojected filename
        self.clipLayer = None # store the clipping vector layer

        self.listIDInputs={} # dictionary: key -> layer name. See keys definition in the code ('VGT', 'RFE', ...)
        self.listIDWeightsPotential={}
        self.listIDWeightsActual={}
        
        SettingsOrganisation='RCMRD_QGIS'
        SettingsApplication='RCMRD_LandDegr'
Beispiel #3
0
class RCMRD_LandDegr:
    """QGIS Plugin Implementation."""

    def __init__(self, iface):
        """Constructor.

        :param iface: An interface instance that will be passed to this class
            which provides the hook by which you can manipulate the QGIS
            application at run time.
        :type iface: QgsInterface
        """
        # Save reference to the QGIS interface
        self.iface = iface
        # initialize plugin directory
        self.plugin_dir = os.path.dirname(__file__)
        # initialize locale
        locale = QSettings().value('locale/userLocale')[0:2]
        locale_path = os.path.join(
            self.plugin_dir,
            'i18n',
            'RCMRD_LandDegr_{}.qm'.format(locale))

        if os.path.exists(locale_path):
            self.translator = QTranslator()
            self.translator.load(locale_path)

            if qVersion() > '4.3.3':
                QCoreApplication.installTranslator(self.translator)

        # Create the dialog (after translation) and keep reference
        self.dlg = RCMRD_LandDegrDialog()

        # Declare instance attributes
        self.actions = []
        self.menu = self.tr(u'&RCRMD: land degradation')
        # TODO: We are going to let the user set this up in a future iteration
        self.toolbar = self.iface.addToolBar(u'RCMRD: land degradation')
        self.toolbar.setObjectName(u'RCMRD: land degradation')

        # Declare user instance variables
        self.roiDefinitions = None
        self.roiDefinitions = [{"name":"IGAD", "roiXY":[21.8094, -4.6775, 51.417, 22.227]},
            {"name":"Djibouti", "roiXY":[41.749110148,10.929824931, 43.418711785,12.707912502]},
            {"name":"Eritrea", "roiXY":[36.423647095,12.360021871, 43.123871290,18.004828192]},
            {"name":"Ethiopia", "roiXY":[32.989799845,3.403333435, 47.979169149,14.879532166]},
            {"name":"Kenya", "roiXY":[33.890468384,-4.677504165, 41.885019165,5.030375823]},
            {"name":"Sudan", "roiXY":[42.647246541,7.996515605, 48.93911199991,11.498928127]},
            {"name":"South Sudan", "roiXY":[24.121555623,3.490201518, 35.920835409,12.216154684]},
            {"name":"Somali Land", "roiXY":[42.647246541,7.996515605, 48.93911199991,11.498928127]},
            {"name":"Somalia", "roiXY":[40.965385376,-1.69628316498, 51.417037811,11.989118646]},
            {"name":"Uganda", "roiXY":[29.548459513,-1.475205994, 35.006472615,4.219691875]}]
        
        #self.selectedRoi = None
        self.raster_list = [] # list all files open in QGis, contains file objects
        self.dictReproj = None # dictionary: 'input filename' -> reprojected filename
        self.clipLayer = None # store the clipping vector layer

        self.listIDInputs={} # dictionary: key -> layer name. See keys definition in the code ('VGT', 'RFE', ...)
        self.listIDWeightsPotential={}
        self.listIDWeightsActual={}
        
        SettingsOrganisation='RCMRD_QGIS'
        SettingsApplication='RCMRD_LandDegr'

    # noinspection PyMethodMayBeStatic
    def tr(self, message):
        """Get the translation for a string using Qt translation API.

        We implement this ourselves since we do not inherit QObject.

        :param message: String for translation.
        :type message: str, QString

        :returns: Translated version of message.
        :rtype: QString
        """
        # noinspection PyTypeChecker,PyArgumentList,PyCallByClass
        return QCoreApplication.translate('RCMRD_LandDegr', message)


    def add_action(
        self,
        icon_path,
        text,
        callback,
        enabled_flag=True,
        add_to_menu=True,
        add_to_toolbar=True,
        status_tip=None,
        whats_this=None,
        parent=None):
        """Add a toolbar icon to the toolbar.

        :param icon_path: Path to the icon for this action. Can be a resource
            path (e.g. ':/plugins/foo/bar.png') or a normal file system path.
        :type icon_path: str

        :param text: Text that should be shown in menu items for this action.
        :type text: str

        :param callback: Function to be called when the action is triggered.
        :type callback: function

        :param enabled_flag: A flag indicating if the action should be enabled
            by default. Defaults to True.
        :type enabled_flag: bool

        :param add_to_menu: Flag indicating whether the action should also
            be added to the menu. Defaults to True.
        :type add_to_menu: bool

        :param add_to_toolbar: Flag indicating whether the action should also
            be added to the toolbar. Defaults to True.
        :type add_to_toolbar: bool

        :param status_tip: Optional text to show in a popup when mouse pointer
            hovers over the action.
        :type status_tip: str

        :param parent: Parent widget for the new action. Defaults None.
        :type parent: QWidget

        :param whats_this: Optional text to show in the status bar when the
            mouse pointer hovers over the action.

        :returns: The action that was created. Note that the action is also
            added to self.actions list.
        :rtype: QAction
        """

        icon = QIcon(icon_path)
        action = QAction(icon, text, parent)
        action.triggered.connect(callback)
        action.setEnabled(enabled_flag)

        if status_tip is not None:
            action.setStatusTip(status_tip)

        if whats_this is not None:
            action.setWhatsThis(whats_this)

        if add_to_toolbar:
            self.toolbar.addAction(action)

        if add_to_menu:
            self.iface.addPluginToMenu(
                self.menu,
                action)

        self.actions.append(action)

        return action

    def initGui(self):
        """Create the menu entries and toolbar icons inside the QGIS GUI."""

        icon_path = ':/plugins/RCMRD_LandDegr/icon.png'
        self.add_action(
            icon_path,
            text=self.tr(u'Land Degradation Indices'),
            callback=self.run,
            whats_this=self.tr(u'Compute RCMRD LDIM'),
            parent=self.iface.mainWindow())

    def unload(self):
        """Removes the plugin menu item and icon from QGIS GUI."""
        for action in self.actions:
            self.iface.removePluginMenu(
                self.tr(u'&Land Degradation (RCMRD)'),
                action)
            self.iface.removeToolBarIcon(action)
        # remove the toolbar
        del self.toolbar

    # ____________________
    def logMsg(self, msg, errorLvl = QgsMessageLog.INFO):
        QgsMessageLog.logMessage( msg, tag='RCMRD Land Degradation', level=errorLvl)
        
        prepend=''
        if errorLvl==QgsMessageLog.WARNING:
            self.iface.messageBar().pushMessage("WARNING", msg)
            prepend="Warning! "
        if errorLvl==QgsMessageLog.CRITICAL:
            self.iface.messageBar().pushMessage("CRITICAL",msg)
            prepend="Critical error! "
        self.dlg.logTextDump.append(prepend + msg)
    #  ____________________
    # Business logic functions and methods
    # ____________________
    # returns uniq of an array, preserve order
    def uniquify(self, seq):
        noDupes = []
        [noDupes.append(i) for i in seq if not noDupes.count(i)]
        return noDupes
    # ____________________
    # Get target extent, in geographical coordinates
    #def getTE(self):
    #    xmin=float(self.dlg.RoiWestEdit.text())
    #    xmax=float(self.dlg.RoiEastEdit.text())
    #    ymin=float(self.dlg.RoiSouthEdit.text())
    #    ymax=float(self.dlg.RoiNorthEdit.text())
    #    return [xmin, ymin, xmax, ymax]
    # _____________________
    def ParseType(self, type):
        if type == 'Byte':
	    return GDT_Byte
        elif type == 'Int16':
	        return GDT_Int16
        elif type == 'UInt16':
	        return GDT_UInt16
        elif type == 'Int32':
	        return GDT_Int32
        elif type == 'UInt32':
	        return GDT_UInt32
        elif type == 'Float32':
	        return GDT_Float32
        elif type == 'Float64':
	        return GDT_Float64
        elif type == 'CInt16':
	        return GDT_CInt16
        elif type == 'CInt32':
	        return GDT_CInt32
        elif type == 'CFloat32':
	        return GDT_CFloat32
        elif type == 'CFloat64':
	        return GDT_CFloat64
        else:
	    return GDT_Float32
    # _____________________
    # doInitDir: if the directory does not exist: create it
    def doInitDir(self, thisDir):
        if os.path.isdir(thisDir):
            return True
        os.makedirs(thisDir)
    # _____________________
    def doTempFile(self, prefix='', suffix='', dir=''):
        idTag = random.randint(10000, 99999)
        return os.path.join(dir, prefix + '_' + str(idTag) + suffix)
        
    # ____________________
    # search for a layer name, return filename
    def retrieveFromName(self, name):
        for ii in self.raster_list:
            if ii.name()==name:
                return ii.source()
        return False
    # ____________________
    # return an array of input files (file paths)
    # For each type of file (listed in listIDInputs), tries macthing corresponding name from rasters_layer
    # note: do not trust sorting order
    def getInputFiles(self):
        inFiles=[]
        for kk, ii in self.listIDInputs.iteritems():
            thisFile = self.retrieveFromName( ii )
            if thisFile==False:
                self.logMsg("Could no retrieve file {} associated to key {}".format( ii, kk ))
                return False
            else:
                inFiles.append(thisFile)
                self.dictInput[ii]=thisFile
                
        return inFiles
    # _____________________    
    # doResample: resample the inputs to a common projection and resolution, will crop images
    # images saved into the working directory
    # note: to read documentation about an algorithm: import processing; processing.alghelp("gdalogr:warpreproject")
    def doResample(self, inFileName, output):
        self.doInitDir( self.dlg.editWrkDir.text() )

        # for now, dst is hard coded
        #inCRS = QgsCoordinateReferenceSystem(4326) # actually, must be read from the input file
        newCRS = QgsCoordinateReferenceSystem()
        #newCRS.createFromProj4('+proj=aea +lat_1=18 +lat_2=-4 +lat_0=11 +lon_0=25 +x_0=37.5 +y_0=11')
        newCRS.createFromSrid(4326)
        if not newCRS.isValid():
            self.logMsg("The projection definition is not valid. Exit", QgsMessageLog.CRITICAL)
            return False

        # see: https://docs.qgis.org/2.6/en/docs/user_manual/processing_algs/gdalogr/gdal_projections/warpreproject.html
        # inFileName = self.raster_list[self.dlg.comboVegetationIndex.currentIndex()].source()
        inFID = gdal.Open(inFileName, GA_ReadOnly)
        inCRS = inFID.GetProjection()
        inTrans = inFID.GetGeoTransform()
        inDataType = inFID.GetRasterBand(1).DataType
        # for now, we only resample 1 dataset, to be placed in a loop later on
        TR = self.dlg.spinTR_deg.value()
        extraParam=''
        if self.clipLayer is not None:
            ext = self.clipLayer.extent()
            bb  = [ ext.xMinimum(), ext.yMinimum(), ext.xMaximum(), ext.yMaximum() ]
            extraParam = '-dstnodata 0 -te {} {} {} {} -cutline "{}" -crop_to_cutline '.format(bb[0], bb[1], bb[2], bb[3], self.dlg.editClipShp.text() )
        method = 0 # because we resample thematic layers
        # rtype 0: Byte, 1: int16, 2: uint16, 3:uint32, 4: int32, 5: Float32, 6: Float54
             
        # processing.runalg("gdalogr:warpreproject")
        #ALGORITHM: Warp (reproject)
        #INPUT <ParameterRaster>
        #SOURCE_SRS <ParameterCrs>
        #DEST_SRS <ParameterCrs>
        #NO_DATA <ParameterString>
        #TR <ParameterNumber>
        #METHOD <ParameterSelection>
        #RTYPE <ParameterSelection>
        #COMPRESS <ParameterSelection>
        #JPEGCOMPRESSION <ParameterNumber>
        #ZLEVEL <ParameterNumber>
        #PREDICTOR <ParameterNumber>
        #TILED <ParameterBoolean>
        #BIGTIFF <ParameterSelection>
        #TFW <ParameterBoolean>
        #EXTRA <ParameterString>
        #OUTPUT <OutputRaster>

        #METHOD(Resampling method):	0 - near, 1 - bilinear, 2 - cubic, 3 - cubicspline, 4 - lanczos
        #RTYPE(Output raster type): 0 - Byte, 1 - Int16, 2 - UInt16, 3 - UInt32, 4 - Int32, 5 - Float32, 6 - Float64
        #COMPRESS(GeoTIFF options. Compression type): 	0 - NONE, 1 - JPEG, 2 - LZW, 3 - PACKBITS, 4 - DEFLATE
        #BIGTIFF(Control whether the created file is a BigTIFF or a classic TIFF): 0 - , 1 - YES, 2 - NO, 3 - IF_NEEDED, 4 - IF_SAFER
        testproc = processing.runalg('gdalogr:warpreproject',
                          inFileName, # input
                          inCRS, # source ss
                          newCRS.toProj4(), # dest srs
                          '', # no data, <parameterString>
                          TR, # target resolution: 0=unchanged
                          0, # method: thematic layers, use 0
                          0, # output raster type
                          2, # compression
                          None, # jpeg compression
                          None, # zlevel
                          None, # predictor
                          None, # tiled
                          None, # bigtiff
                          None, # TFW
                          extraParam, # extra 
                          output)
        if not testproc:
            self.logMsg("Reprojection failed for file {}".format(inFileName))
            return False
                       
        return True
    
    # ____________________
    def doIndices(self):
    
        self.logMsg("In do indices")
    
        # open reprojected files
        fid={}
        noData={}
        for id, layerName in self.listIDInputs.iteritems():
            thisFile = self.dictReproj[ self.retrieveFromName( self.listIDInputs[id] )]
            fid[id] = gdal.Open(thisFile, GA_ReadOnly)
            if fid[id] is None:
                self.logMsg('Error: could not open file {}'.format(thisFile), QgsMessageLog.CRITICAL)
                return False
            noData[id]=fid[id].GetRasterBand(1).GetNoDataValue()
            self.logMsg("dataset {}, no data is {}".format(id, noData[id]))
        
        # create ouputs from info read in VGT
        # this implies that all files were reprojected to the same footprint and resolution
        ns = fid['VGT'].RasterXSize
        nl = fid['VGT'].RasterYSize
        projection = fid['VGT'].GetProjection()
        geotrans = fid['VGT'].GetGeoTransform()
        outDrv = gdal.GetDriverByName('GTiff')
        outFID = {}
        outFID['Actual'] = outDrv.Create( self.dlg.editOutALDI.text(), ns, nl, 1, GDT_Float32 )
        outFID['Potential'] = outDrv.Create( self.dlg.editOutPLDI.text(), ns, nl, 1, GDT_Float32 )
        # define outputs projections and geotransformations
        for ii in ['Actual', 'Potential']:
            outFID[ii].SetProjection(projection)
            outFID[ii].SetGeoTransform(geotrans)
        
        # infos
        self.logMsg("Weights Actual")
        for ii, ww in self.listIDWeightsActual.iteritems():
            self.logMsg("IDWeightsActual[{}]={}".format(ii,ww))
        self.logMsg("Weights Potential")
        for ii, ww in self.listIDWeightsPotential.iteritems():
            self.logMsg("IDWeightsPotential[{}]={}".format(ii,ww))
        
        # compute indicators for each line
        for il in range(nl):
            data={}
            outData = {}
            for id in self.listIDInputs:
                data[ id ] = numpy.ravel( fid[id].GetRasterBand(1).ReadAsArray(0,il, ns, 1) )
                
                
            # let's compute actual LDIM
            dataActual=numpy.zeros(ns)
            for ii, ww in self.listIDWeightsActual.iteritems():
                if noData[ii] is not None:
                    wdata = ( data[ii] != noData[ii] )
                    if wdata.any():
                        dataActual[wdata] += ww * data[ii][wdata]
                else:
                    dataActual += ww * data[ii]
                
            dataPotential = numpy.zeros(ns)
            for ii, ww in self.listIDWeightsPotential.iteritems():
                if noData[ii] is not None:
                    wdata = data[ii] != noData[ii]
                    if wdata.any():
                        dataPotential[wdata] += ww * data[ii][wdata]
                else:
                    dataPotential += ww * data[ii]
                
            # save lines
            outFID['Actual'].GetRasterBand(1).WriteArray( dataActual.reshape(1,ns), 0, il)
            outFID['Potential'].GetRasterBand(1).WriteArray( dataPotential.reshape(1,ns), 0, il)
            
        return True
        
    # ____________________
    # Run business logic
    # 1./ reproject/resample input files, save in tmp files
    # 2./ compute indices, per pixel, using weights, save in output files
    # Will exit on any error, reports for errors
    def doProcessing(self):
        # Inputs are reprojected and resampled
        listInput = self.getInputFiles()
        if listInput == False:
            self.logMsg("Missing input files, processing impossible")
            return False
        for thisFName in listInput:
            self.logMsg("Resampling and reprojection file {}".format(thisFName))
            output = self.doTempFile('reproject', '.tif', self.dlg.editWrkDir.text() )
            self.dictReproj[ thisFName ] = output
            if self.doResample(thisFName, output) == False:
                self.logMsg("Reprojection failed for {}".format(thisFName))
                return False

        # now compute indices
        if self.doIndices() == False:
            self.logMsg("Error in processing indices")
            return False

        return True
    # ____________________    
    def doCheckToGo(self):
        
        #if (self.selectedRoi) is None:
        #    self.logMsg("Please choose a region, in the 'Settings' tab.")
        #    self.dlg.logTextDump.append("Please choose a region, in the 'Settings' tab.")
        #    self.dlg.tabWidget.setCurrentWidget(self.dlg.logTextDump)
        #    return False
        self.logMsg("Checking inputs")
        # clipping vector is now mandatory
        if self.dlg.editClipShp.text()=='':
            self.logMsg("You must define a clipping vector (for example a shapefile)", QgsMessageLog.CRITICAL)
            self.dlg.tabWidget.setCurrentWidget(self.dlg.logTextDump)
            return False
        
        # check all files are different
        listFName=[ii.source() for ii in self.raster_list]
        if self.uniquify(listFName) != listFName:
            self.logMsg("Input files must be different. Please revise inputs in 'Input files' tab.", QgsMessageLog.CRITICAL)
            tabWidget.setCurrentWidget(self.dlg.logTextDump)

        self.listIDInputs={'VGT': self.dlg.comboVegetationIndex.currentText(),
            'RFE':self.dlg.comboRainfallErosivity.currentText(),
            'PopDens':self.dlg.comboPopDensity.currentText(),
            'SoilErod':self.dlg.comboSoilErodibility.currentText(),
            'SlopeLF':self.dlg.comboSlopeLF.currentText() }
            
        self.listIDWeightsPotential={'RFE': self.dlg.spinPotRFE.value(),
            'PopDens': self.dlg.spinPotPopDens.value(),
            'SoilErod': self.dlg.spinPotSoilErod.value(),
            'SlopeLF': self.dlg.spinPotSlopeLF.value()}
            
        self.listIDWeightsActual={'VGT': self.dlg.spinActVGT.value(),
            'RFE': self.dlg.spinActRFE.value(),
            'PopDens': self.dlg.spinActPopDens.value(),
            'SoilErod': self.dlg.spinActSoilErod.value(),
            'SlopeLF': self.dlg.spinActSlopeLF.value()}
            
        return True
    # _____________________
    #def displayRoiValues(self):
    #    if self.dlg.comboChooseArea.currentIndex() is None:
    #        return
    #    elif self.dlg.comboChooseArea.currentIndex() == -1:
    #        self.dlg.RoiWestEdit.clear()
    #        self.dlg.RoiEastEdit.clear()
    #        self.dlg.RoiSouthEdit.clear()
    #        self.dlg.RoiNorthEdit.clear()
    #    else:
    #        listRoiNames = []
    #        listRoiNames = [ ii["name"] for ii in self.roiDefinitions ]
    #        self.selectedRoi = listRoiNames[self.dlg.comboChooseArea.currentIndex()]
    #        # West, xmin, roiXY[0]
    #        self.dlg.RoiWestEdit.setText( "%12.7f" % [ f["roiXY"][0] for f in self.roiDefinitions if (f["name"]==self.selectedRoi) ][0]  )
    #        self.dlg.RoiWestEdit.displayText
    #        # East, xmax, roiXY[2]
    #        self.dlg.RoiEastEdit.setText( "%12.7f" % [ f["roiXY"][2] for f in self.roiDefinitions if (f["name"]==self.selectedRoi) ][0]  )
    #        self.dlg.RoiEastEdit.displayText
    #        # South, ymin, roiXY[1]
    #        self.dlg.RoiSouthEdit.setText( "%12.7f" % [ f["roiXY"][1] for f in self.roiDefinitions if (f["name"]==self.selectedRoi) ][0]  )
    #        self.dlg.RoiEastEdit.displayText
    #        # North ymax, roiXY[3]
    #        self.dlg.RoiNorthEdit.setText( "%12.7f" % [ f["roiXY"][3] for f in self.roiDefinitions if (f["name"]==self.selectedRoi) ][0]  )
    #        self.dlg.RoiEastEdit.displayText
    #
    #    return True
    # _____________________
    # add a filename to the list of opened files
    # anf move the index to the last opened file
    def openFile(self, name):
        text={'SHPCLIP':'clipping vector file','VGT':'Vegetation', 'RFE':'Rainfall erosivity', 'PopDens': 'Population density', 'SoilErod':'Soil Erodibility','SlopeLF':'Slope length'}
        ltype={'SHPCLIP':'vector','VGT':'raster', 'RFE':'raster', 'PopDens': 'raster', 'SoilErod':'raster','SlopeLF':'raster'}
        dialog = QFileDialog()
        fname = dialog.getOpenFileName(self.dlg, self.tr("Open raster file"))
        if fname=='':
            return True
 
        if ltype[name]=='raster':
            layer = QgsRasterLayer(fname, name)
            if not layer.isValid():
                self.logMsg("Could not open this file")
                self.dlg.logTextDump.append( "Could not open file {}".format(name) )
                self.dlg.tabWidget.setCurrentWidget(self.dlg.logTextDump)
                return False
            self.raster_list.append(layer)
            
        if ltype[name]=='vector':
            layer = QgsVectorLayer( fname, "Clip", 'ogr')
            if not layer.isValid():
                    self.logMsg( "Could not load vector layer {} with {}".format(layer.name(), fname), QgsMessageLog.WARNING)
                    self.dlg.logTextDump.append( "Could not load vector layer {}".format(fname) )
                    self.dlg.setCurrentWidget(self.logTextDump)
                    return False
            self.clipLayer = layer
            
        # now put it in the correct list and make it the current selection
        if name=='VGT':
            self.dlg.comboVegetationIndex.addItem(name)
            self.dlg.comboVegetationIndex.setCurrentIndex( self.dlg.comboVegetationIndex.count()-1 )
        elif name=='RFE':
            self.dlg.comboRainfallErosivity.addItem(fname)
            self.dlg.comboRainfallErosivity.setCurrentIndex( self.dlg.comboRainfallErosivity.count()-1 )
        elif name=='PopDens':
            self.dlg.comboPopDensity.addItem(fname)
            self.dlg.comboPopDensity.setCurrentIndex( self.dlg.comboPopDensity.count()-1 )
        elif name=='SoilErod':
            self.dlg.comboSoilErodibility.addItem(fname)
            self.dlg.comboSoilErodibility.setCurrentIndex( self.dlg.comboSoilErodibility.count()-1 )
        elif name=='SlopeLF':
            self.dlg.comboSlopeLF.addItem( fname)
            self.dlg.comboSlopeLF.setCurrentIndex( self.dlg.comboSlopeLF.count()-1 )
        elif name=='SHPCLIP':
            self.dlg.editClipShp.setText( fname )
        return True
    # ____________________
    def saveFile(self, selector):
        text={'PotLDIM':'Potential LDIM', 'ActLDIM':'Actual LDIM'}
        dialog = QFileDialog()
        fname = dialog.getSaveFileName(self.dlg, self.tr("Define a file name to save {}".format(text[selector])), os.path.expanduser("~"))
    
        if fname:
            # be sure to append '.tif'
            pathname, extension = os.path.splitext(fname)
            if extension!='.tif':
                fname = pathname + '.tif'
                
            if selector=='PotLDIM':
                self.dlg.editOutPLDI.setText(fname)
            if selector=='ActLDIM':
                self.dlg.editOutALDI.setText(fname)
    
        return True
    # ___________________
    def TR_degEdited(self):
        # spot VGT has pixel centered coordinates and considers 112 pixels per degrees
        # for pixel corners coordinates, one considers 111 pixels per degrees
        # convert into meters
        self.dlg.spinTR_m.setValue( self.dlg.spinTR_deg.value()* 111.0 * 1000.0 )
    def TR_mEdited(self):
        # convert into degrees
        self.dlg.spinTR_deg.setValue( self.dlg.spinTR_m.value() / ( 1000.0 * 111.0) )
    #____________________
    def saveDir(self, selector):
        text={'WrkDir':'intermediate processing'}
        dialog = QFileDialog()
        dname = dialog.getExistingDirectory(self.dlg, self.tr("Choose a directory to save {}".format(text[selector])), os.path.expanduser("~"))
        if dname:
            if selector=='WrkDir':
                self.dlg.editWrkDir.setText(dname)
    # ___________________
#    def doClipShpWidgetsUpdate(self):
#        if self.dlg.checkClipShp.isChecked():
#            self.dlg.editClipShp.setEnabled(True)
#            self.dlg.buttonClipShp.setEnabled(True)
#        else:
#            self.dlg.editClipShp.setEnabled(False)
#            self.dlg.buttonClipShp.setEnabled(False)
    # ____________________
    def doInitGUI(self):
    
        self.raster_list = []
        self.dictInput = {}
        self.dictReproj = {}
    
        # clear files selectors
        #self.dlg.comboChooseArea.clear()
        self.dlg.comboVegetationIndex.clear()
        self.dlg.comboPopDensity.clear()
        self.dlg.comboRainfallErosivity.clear()
        self.dlg.comboSlopeLF.clear()
        self.dlg.comboSoilErodibility.clear()
        # do not clear messages tab: so we can read messages from the former run

        # if wrkDir not set, then initialise, else leave it as it is
        if self.dlg.editWrkDir.text()=='':
            self.dlg.editWrkDir.setText(self.dlg.editWrkDir.text())

        # force opening on the "Help" tab
        self.dlg.tabWidget.setCurrentWidget(self.dlg.tabHelp)
        
        # setup "settings" tools. ROI are defined with xMin, yMin, xMax, yMax
        #self.dlg.comboChooseArea.addItems( [ ii["name"] for ii in self.roiDefinitions ] )
        #for ii in self.roiDefinitions:
        #    self.dlg.logTextDump.append( ii["name"] )
        #self.dlg.comboChooseArea.currentIndexChanged.connect(self.displayRoiValues)
        #self.dlg.comboChooseArea.setCurrentIndex(-1)
        #self.displayRoiValues()

        # connect the file chooser function to the buttons
        self.dlg.buttonVegetationIndex.clicked.connect(lambda: self.openFile('VGT'))
        self.dlg.buttonRainfallErosivity.clicked.connect(lambda: self.openFile('RFE'))
        self.dlg.buttonPopDensity.clicked.connect(lambda: self.openFile('PopDens'))
        self.dlg.buttonErodibility.clicked.connect(lambda: self.openFile('SoilErod'))
        self.dlg.buttonSlopeLF.clicked.connect(lambda: self.openFile('SlopeLF'))

        # connect buttons to saveFile functions
        self.dlg.buttonPotLDIM.clicked.connect(lambda: self.saveFile('PotLDIM') )
        self.dlg.buttonActLDIM.clicked.connect(lambda: self.saveFile('ActLDIM') )
        
        # define temp directory
        self.dlg.editWrkDir.setText( os.path.join( os.path.expanduser("~"), "qgis_rcmrdplugin" ) )
        self.dlg.buttonWrkDir.clicked.connect(lambda: self.saveDir('WrkDir'))
        
        # pixel resolution control
        self.dlg.spinTR_m.setValue(100.0)
        self.dlg.spinTR_deg.setValue(100.0 / (1000.0 * 111.0) ) 
        self.dlg.spinTR_m.valueChanged.connect(self.TR_mEdited)
        self.dlg.spinTR_deg.valueChanged.connect(self.TR_degEdited)

        # signals for clipShp widgets
        #self.dlg.checkClipShp.stateChanged.connect( self.doClipShpWidgetsUpdate )
        self.dlg.buttonClipShp.clicked.connect( (lambda: self.openFile('SHPCLIP') ) )
        
    # ____________________
    def run(self):
        """Set up the interface content and call business-logic functions"""

        self.doInitGUI()

        # setup input files
        self.dlg.logTextDump.append("Scanning loaded files")
        layers = self.iface.legendInterface().layers()
        vector_list = []
        self.raster_list=[] # reset to 0 each time the plugin is called
        
        # detect vectors and rasters already loaded in QGis
        for layer in layers:
            layerType = layer.type()
            
            if (layerType == QgsMapLayer.VectorLayer) and (layer.wkbType()==QGis.WKBPolygon):
                vector_list.append(layer.name())
                QgsMessageLog.logMessage("--- Vector")
                #QgsMessageLog.logMessage(str(dir(layer)))
                print layer.geometryType()
                QgsMessageLog.logMessage('Vector: '+str(layer.name())+ ' '+str(layer.geometryType()))
            if layerType == QgsMapLayer.RasterLayer:
                self.raster_list.append(layer)

        # Assign the pre-loaded rasters and vectors to the interface objects
        for ii in self.raster_list:
            self.dlg.comboVegetationIndex.addItem(ii.name())
            self.dlg.comboPopDensity.addItem(ii.name())
            self.dlg.comboRainfallErosivity.addItem(ii.name())
            self.dlg.comboSlopeLF.addItem(ii.name())
            self.dlg.comboSoilErodibility.addItem(ii.name())

        # show the dialog
        self.dlg.show()
        self.dlg.logTextDump.append("Waiting for settings")
        # Run the dialog event loop, and exit only if all check are ok
        checkToGo = False
        result = False
        while not checkToGo:
            result = self.dlg.exec_()
            if result:
                checkToGo = self.doCheckToGo()
            else:
                checkToGo = True
        #self.dlg.logTextDump.append("Application running.")
        #self.iface.messageBar().pushMessage("Info","Running")

        # See if OK was pressed
        self.logMsg("Result {} checktogo {}".format(result, checkToGo))
        if result:
            # then run processings
            if self.doProcessing():
                self.iface.addRasterLayer(unicode(self.dlg.editOutPLDI.text()), 'Potential LDIM')
                self.iface.addRasterLayer(unicode(self.dlg.editOutALDI.text()), 'Actual LDIM')
Beispiel #4
0
    def __init__(self, iface):
        """Constructor.

        :param iface: An interface instance that will be passed to this class
            which provides the hook by which you can manipulate the QGIS
            application at run time.
        :type iface: QgsInterface
        """
        # Save reference to the QGIS interface
        self.iface = iface
        # initialize plugin directory
        self.plugin_dir = os.path.dirname(__file__)
        # initialize locale
        locale = QSettings().value('locale/userLocale')[0:2]
        locale_path = os.path.join(self.plugin_dir, 'i18n',
                                   'RCMRD_LandDegr_{}.qm'.format(locale))

        if os.path.exists(locale_path):
            self.translator = QTranslator()
            self.translator.load(locale_path)

            if qVersion() > '4.3.3':
                QCoreApplication.installTranslator(self.translator)

        # Create the dialog (after translation) and keep reference
        self.dlg = RCMRD_LandDegrDialog()

        # Declare instance attributes
        self.actions = []
        self.menu = self.tr(u'&RCRMD: land degradation')
        # TODO: We are going to let the user set this up in a future iteration
        self.toolbar = self.iface.addToolBar(u'RCMRD: land degradation')
        self.toolbar.setObjectName(u'RCMRD: land degradation')

        # Declare user instance variables
        self.roiDefinitions = None
        self.roiDefinitions = [{
            "name": "IGAD",
            "roiXY": [21.8094, -4.6775, 51.417, 22.227]
        }, {
            "name":
            "Djibouti",
            "roiXY": [41.749110148, 10.929824931, 43.418711785, 12.707912502]
        }, {
            "name":
            "Eritrea",
            "roiXY": [36.423647095, 12.360021871, 43.123871290, 18.004828192]
        }, {
            "name":
            "Ethiopia",
            "roiXY": [32.989799845, 3.403333435, 47.979169149, 14.879532166]
        }, {
            "name":
            "Kenya",
            "roiXY": [33.890468384, -4.677504165, 41.885019165, 5.030375823]
        }, {
            "name":
            "Sudan",
            "roiXY": [42.647246541, 7.996515605, 48.93911199991, 11.498928127]
        }, {
            "name":
            "South Sudan",
            "roiXY": [24.121555623, 3.490201518, 35.920835409, 12.216154684]
        }, {
            "name":
            "Somali Land",
            "roiXY": [42.647246541, 7.996515605, 48.93911199991, 11.498928127]
        }, {
            "name":
            "Somalia",
            "roiXY":
            [40.965385376, -1.69628316498, 51.417037811, 11.989118646]
        }, {
            "name":
            "Uganda",
            "roiXY": [29.548459513, -1.475205994, 35.006472615, 4.219691875]
        }]

        #self.selectedRoi = None
        self.raster_list = [
        ]  # list all files open in QGis, contains file objects
        self.dictReproj = None  # dictionary: 'input filename' -> reprojected filename
        self.clipLayer = None  # store the clipping vector layer

        self.listIDInputs = {
        }  # dictionary: key -> layer name. See keys definition in the code ('VGT', 'RFE', ...)
        self.listIDWeightsPotential = {}
        self.listIDWeightsActual = {}

        SettingsOrganisation = 'RCMRD_QGIS'
        SettingsApplication = 'RCMRD_LandDegr'
Beispiel #5
0
class RCMRD_LandDegr:
    """QGIS Plugin Implementation."""
    def __init__(self, iface):
        """Constructor.

        :param iface: An interface instance that will be passed to this class
            which provides the hook by which you can manipulate the QGIS
            application at run time.
        :type iface: QgsInterface
        """
        # Save reference to the QGIS interface
        self.iface = iface
        # initialize plugin directory
        self.plugin_dir = os.path.dirname(__file__)
        # initialize locale
        locale = QSettings().value('locale/userLocale')[0:2]
        locale_path = os.path.join(self.plugin_dir, 'i18n',
                                   'RCMRD_LandDegr_{}.qm'.format(locale))

        if os.path.exists(locale_path):
            self.translator = QTranslator()
            self.translator.load(locale_path)

            if qVersion() > '4.3.3':
                QCoreApplication.installTranslator(self.translator)

        # Create the dialog (after translation) and keep reference
        self.dlg = RCMRD_LandDegrDialog()

        # Declare instance attributes
        self.actions = []
        self.menu = self.tr(u'&RCRMD: land degradation')
        # TODO: We are going to let the user set this up in a future iteration
        self.toolbar = self.iface.addToolBar(u'RCMRD: land degradation')
        self.toolbar.setObjectName(u'RCMRD: land degradation')

        # Declare user instance variables
        self.roiDefinitions = None
        self.roiDefinitions = [{
            "name": "IGAD",
            "roiXY": [21.8094, -4.6775, 51.417, 22.227]
        }, {
            "name":
            "Djibouti",
            "roiXY": [41.749110148, 10.929824931, 43.418711785, 12.707912502]
        }, {
            "name":
            "Eritrea",
            "roiXY": [36.423647095, 12.360021871, 43.123871290, 18.004828192]
        }, {
            "name":
            "Ethiopia",
            "roiXY": [32.989799845, 3.403333435, 47.979169149, 14.879532166]
        }, {
            "name":
            "Kenya",
            "roiXY": [33.890468384, -4.677504165, 41.885019165, 5.030375823]
        }, {
            "name":
            "Sudan",
            "roiXY": [42.647246541, 7.996515605, 48.93911199991, 11.498928127]
        }, {
            "name":
            "South Sudan",
            "roiXY": [24.121555623, 3.490201518, 35.920835409, 12.216154684]
        }, {
            "name":
            "Somali Land",
            "roiXY": [42.647246541, 7.996515605, 48.93911199991, 11.498928127]
        }, {
            "name":
            "Somalia",
            "roiXY":
            [40.965385376, -1.69628316498, 51.417037811, 11.989118646]
        }, {
            "name":
            "Uganda",
            "roiXY": [29.548459513, -1.475205994, 35.006472615, 4.219691875]
        }]

        #self.selectedRoi = None
        self.raster_list = [
        ]  # list all files open in QGis, contains file objects
        self.dictReproj = None  # dictionary: 'input filename' -> reprojected filename
        self.clipLayer = None  # store the clipping vector layer

        self.listIDInputs = {
        }  # dictionary: key -> layer name. See keys definition in the code ('VGT', 'RFE', ...)
        self.listIDWeightsPotential = {}
        self.listIDWeightsActual = {}

        SettingsOrganisation = 'RCMRD_QGIS'
        SettingsApplication = 'RCMRD_LandDegr'

    # noinspection PyMethodMayBeStatic
    def tr(self, message):
        """Get the translation for a string using Qt translation API.

        We implement this ourselves since we do not inherit QObject.

        :param message: String for translation.
        :type message: str, QString

        :returns: Translated version of message.
        :rtype: QString
        """
        # noinspection PyTypeChecker,PyArgumentList,PyCallByClass
        return QCoreApplication.translate('RCMRD_LandDegr', message)

    def add_action(self,
                   icon_path,
                   text,
                   callback,
                   enabled_flag=True,
                   add_to_menu=True,
                   add_to_toolbar=True,
                   status_tip=None,
                   whats_this=None,
                   parent=None):
        """Add a toolbar icon to the toolbar.

        :param icon_path: Path to the icon for this action. Can be a resource
            path (e.g. ':/plugins/foo/bar.png') or a normal file system path.
        :type icon_path: str

        :param text: Text that should be shown in menu items for this action.
        :type text: str

        :param callback: Function to be called when the action is triggered.
        :type callback: function

        :param enabled_flag: A flag indicating if the action should be enabled
            by default. Defaults to True.
        :type enabled_flag: bool

        :param add_to_menu: Flag indicating whether the action should also
            be added to the menu. Defaults to True.
        :type add_to_menu: bool

        :param add_to_toolbar: Flag indicating whether the action should also
            be added to the toolbar. Defaults to True.
        :type add_to_toolbar: bool

        :param status_tip: Optional text to show in a popup when mouse pointer
            hovers over the action.
        :type status_tip: str

        :param parent: Parent widget for the new action. Defaults None.
        :type parent: QWidget

        :param whats_this: Optional text to show in the status bar when the
            mouse pointer hovers over the action.

        :returns: The action that was created. Note that the action is also
            added to self.actions list.
        :rtype: QAction
        """

        icon = QIcon(icon_path)
        action = QAction(icon, text, parent)
        action.triggered.connect(callback)
        action.setEnabled(enabled_flag)

        if status_tip is not None:
            action.setStatusTip(status_tip)

        if whats_this is not None:
            action.setWhatsThis(whats_this)

        if add_to_toolbar:
            self.toolbar.addAction(action)

        if add_to_menu:
            self.iface.addPluginToMenu(self.menu, action)

        self.actions.append(action)

        return action

    def initGui(self):
        """Create the menu entries and toolbar icons inside the QGIS GUI."""

        icon_path = ':/plugins/RCMRD_LandDegr/icon.png'
        self.add_action(icon_path,
                        text=self.tr(u'Land Degradation Indices'),
                        callback=self.run,
                        whats_this=self.tr(u'Compute RCMRD LDIM'),
                        parent=self.iface.mainWindow())

    def unload(self):
        """Removes the plugin menu item and icon from QGIS GUI."""
        for action in self.actions:
            self.iface.removePluginMenu(self.tr(u'&Land Degradation (RCMRD)'),
                                        action)
            self.iface.removeToolBarIcon(action)
        # remove the toolbar
        del self.toolbar

    # ____________________
    def logMsg(self, msg, errorLvl=QgsMessageLog.INFO):
        QgsMessageLog.logMessage(msg,
                                 tag='RCMRD Land Degradation',
                                 level=errorLvl)

        prepend = ''
        if errorLvl == QgsMessageLog.WARNING:
            self.iface.messageBar().pushMessage("WARNING", msg)
            prepend = "Warning! "
        if errorLvl == QgsMessageLog.CRITICAL:
            self.iface.messageBar().pushMessage("CRITICAL", msg)
            prepend = "Critical error! "
        self.dlg.logTextDump.append(prepend + msg)

    #  ____________________
    # Business logic functions and methods
    # ____________________
    # returns uniq of an array, preserve order
    def uniquify(self, seq):
        noDupes = []
        [noDupes.append(i) for i in seq if not noDupes.count(i)]
        return noDupes

    # ____________________
    # Get target extent, in geographical coordinates
    #def getTE(self):
    #    xmin=float(self.dlg.RoiWestEdit.text())
    #    xmax=float(self.dlg.RoiEastEdit.text())
    #    ymin=float(self.dlg.RoiSouthEdit.text())
    #    ymax=float(self.dlg.RoiNorthEdit.text())
    #    return [xmin, ymin, xmax, ymax]
    # _____________________
    def ParseType(self, type):
        if type == 'Byte':
            return GDT_Byte
        elif type == 'Int16':
            return GDT_Int16
        elif type == 'UInt16':
            return GDT_UInt16
        elif type == 'Int32':
            return GDT_Int32
        elif type == 'UInt32':
            return GDT_UInt32
        elif type == 'Float32':
            return GDT_Float32
        elif type == 'Float64':
            return GDT_Float64
        elif type == 'CInt16':
            return GDT_CInt16
        elif type == 'CInt32':
            return GDT_CInt32
        elif type == 'CFloat32':
            return GDT_CFloat32
        elif type == 'CFloat64':
            return GDT_CFloat64
        else:
            return GDT_Float32

    # _____________________
    # doInitDir: if the directory does not exist: create it
    def doInitDir(self, thisDir):
        if os.path.isdir(thisDir):
            return True
        os.makedirs(thisDir)

    # _____________________
    def doTempFile(self, prefix='', suffix='', dir=''):
        idTag = random.randint(10000, 99999)
        return os.path.join(dir, prefix + '_' + str(idTag) + suffix)

    # ____________________
    # search for a layer name, return filename
    def retrieveFromName(self, name):
        for ii in self.raster_list:
            if ii.name() == name:
                return ii.source()
        return False

    # ____________________
    # return an array of input files (file paths)
    # For each type of file (listed in listIDInputs), tries macthing corresponding name from rasters_layer
    # note: do not trust sorting order
    def getInputFiles(self):
        inFiles = []
        for kk, ii in self.listIDInputs.iteritems():
            thisFile = self.retrieveFromName(ii)
            if thisFile == False:
                self.logMsg(
                    "Could no retrieve file {} associated to key {}".format(
                        ii, kk))
                return False
            else:
                inFiles.append(thisFile)
                self.dictInput[ii] = thisFile

        return inFiles

    # _____________________
    # doResample: resample the inputs to a common projection and resolution, will crop images
    # images saved into the working directory
    # note: to read documentation about an algorithm: import processing; processing.alghelp("gdalogr:warpreproject")
    def doResample(self, inFileName, output):
        self.doInitDir(self.dlg.editWrkDir.text())

        # for now, dst is hard coded
        #inCRS = QgsCoordinateReferenceSystem(4326) # actually, must be read from the input file
        newCRS = QgsCoordinateReferenceSystem()
        #newCRS.createFromProj4('+proj=aea +lat_1=18 +lat_2=-4 +lat_0=11 +lon_0=25 +x_0=37.5 +y_0=11')
        newCRS.createFromSrid(4326)
        if not newCRS.isValid():
            self.logMsg("The projection definition is not valid. Exit",
                        QgsMessageLog.CRITICAL)
            return False

        # see: https://docs.qgis.org/2.6/en/docs/user_manual/processing_algs/gdalogr/gdal_projections/warpreproject.html
        # inFileName = self.raster_list[self.dlg.comboVegetationIndex.currentIndex()].source()
        inFID = gdal.Open(inFileName, GA_ReadOnly)
        inCRS = inFID.GetProjection()
        inTrans = inFID.GetGeoTransform()
        inDataType = inFID.GetRasterBand(1).DataType
        # for now, we only resample 1 dataset, to be placed in a loop later on
        TR = self.dlg.spinTR_deg.value()
        extraParam = ''
        if self.clipLayer is not None:
            ext = self.clipLayer.extent()
            bb = [
                ext.xMinimum(),
                ext.yMinimum(),
                ext.xMaximum(),
                ext.yMaximum()
            ]
            extraParam = '-dstnodata 0 -te {} {} {} {} -cutline "{}" -crop_to_cutline '.format(
                bb[0], bb[1], bb[2], bb[3], self.dlg.editClipShp.text())
        method = 0  # because we resample thematic layers
        # rtype 0: Byte, 1: int16, 2: uint16, 3:uint32, 4: int32, 5: Float32, 6: Float54

        # processing.runalg("gdalogr:warpreproject")
        #ALGORITHM: Warp (reproject)
        #INPUT <ParameterRaster>
        #SOURCE_SRS <ParameterCrs>
        #DEST_SRS <ParameterCrs>
        #NO_DATA <ParameterString>
        #TR <ParameterNumber>
        #METHOD <ParameterSelection>
        #RTYPE <ParameterSelection>
        #COMPRESS <ParameterSelection>
        #JPEGCOMPRESSION <ParameterNumber>
        #ZLEVEL <ParameterNumber>
        #PREDICTOR <ParameterNumber>
        #TILED <ParameterBoolean>
        #BIGTIFF <ParameterSelection>
        #TFW <ParameterBoolean>
        #EXTRA <ParameterString>
        #OUTPUT <OutputRaster>

        #METHOD(Resampling method):	0 - near, 1 - bilinear, 2 - cubic, 3 - cubicspline, 4 - lanczos
        #RTYPE(Output raster type): 0 - Byte, 1 - Int16, 2 - UInt16, 3 - UInt32, 4 - Int32, 5 - Float32, 6 - Float64
        #COMPRESS(GeoTIFF options. Compression type): 	0 - NONE, 1 - JPEG, 2 - LZW, 3 - PACKBITS, 4 - DEFLATE
        #BIGTIFF(Control whether the created file is a BigTIFF or a classic TIFF): 0 - , 1 - YES, 2 - NO, 3 - IF_NEEDED, 4 - IF_SAFER
        testproc = processing.runalg(
            'gdalogr:warpreproject',
            inFileName,  # input
            inCRS,  # source ss
            newCRS.toProj4(),  # dest srs
            '',  # no data, <parameterString>
            TR,  # target resolution: 0=unchanged
            0,  # method: thematic layers, use 0
            0,  # output raster type
            2,  # compression
            None,  # jpeg compression
            None,  # zlevel
            None,  # predictor
            None,  # tiled
            None,  # bigtiff
            None,  # TFW
            extraParam,  # extra 
            output)
        if not testproc:
            self.logMsg("Reprojection failed for file {}".format(inFileName))
            return False

        return True

    # ____________________
    def doIndices(self):

        self.logMsg("In do indices")

        # open reprojected files
        fid = {}
        noData = {}
        for id, layerName in self.listIDInputs.iteritems():
            thisFile = self.dictReproj[self.retrieveFromName(
                self.listIDInputs[id])]
            fid[id] = gdal.Open(thisFile, GA_ReadOnly)
            if fid[id] is None:
                self.logMsg('Error: could not open file {}'.format(thisFile),
                            QgsMessageLog.CRITICAL)
                return False
            noData[id] = fid[id].GetRasterBand(1).GetNoDataValue()
            self.logMsg("dataset {}, no data is {}".format(id, noData[id]))

        # create ouputs from info read in VGT
        # this implies that all files were reprojected to the same footprint and resolution
        ns = fid['VGT'].RasterXSize
        nl = fid['VGT'].RasterYSize
        projection = fid['VGT'].GetProjection()
        geotrans = fid['VGT'].GetGeoTransform()
        outDrv = gdal.GetDriverByName('GTiff')
        outFID = {}
        outFID['Actual'] = outDrv.Create(self.dlg.editOutALDI.text(), ns, nl,
                                         1, GDT_Float32)
        outFID['Potential'] = outDrv.Create(self.dlg.editOutPLDI.text(), ns,
                                            nl, 1, GDT_Float32)
        # define outputs projections and geotransformations
        for ii in ['Actual', 'Potential']:
            outFID[ii].SetProjection(projection)
            outFID[ii].SetGeoTransform(geotrans)

        # infos
        self.logMsg("Weights Actual")
        for ii, ww in self.listIDWeightsActual.iteritems():
            self.logMsg("IDWeightsActual[{}]={}".format(ii, ww))
        self.logMsg("Weights Potential")
        for ii, ww in self.listIDWeightsPotential.iteritems():
            self.logMsg("IDWeightsPotential[{}]={}".format(ii, ww))

        # compute indicators for each line
        for il in range(nl):
            data = {}
            outData = {}
            for id in self.listIDInputs:
                data[id] = numpy.ravel(fid[id].GetRasterBand(1).ReadAsArray(
                    0, il, ns, 1))

            # let's compute actual LDIM
            dataActual = numpy.zeros(ns)
            for ii, ww in self.listIDWeightsActual.iteritems():
                if noData[ii] is not None:
                    wdata = (data[ii] != noData[ii])
                    if wdata.any():
                        dataActual[wdata] += ww * data[ii][wdata]
                else:
                    dataActual += ww * data[ii]

            dataPotential = numpy.zeros(ns)
            for ii, ww in self.listIDWeightsPotential.iteritems():
                if noData[ii] is not None:
                    wdata = data[ii] != noData[ii]
                    if wdata.any():
                        dataPotential[wdata] += ww * data[ii][wdata]
                else:
                    dataPotential += ww * data[ii]

            # save lines
            outFID['Actual'].GetRasterBand(1).WriteArray(
                dataActual.reshape(1, ns), 0, il)
            outFID['Potential'].GetRasterBand(1).WriteArray(
                dataPotential.reshape(1, ns), 0, il)

        return True

    # ____________________
    # Run business logic
    # 1./ reproject/resample input files, save in tmp files
    # 2./ compute indices, per pixel, using weights, save in output files
    # Will exit on any error, reports for errors
    def doProcessing(self):
        # Inputs are reprojected and resampled
        listInput = self.getInputFiles()
        if listInput == False:
            self.logMsg("Missing input files, processing impossible")
            return False
        for thisFName in listInput:
            self.logMsg(
                "Resampling and reprojection file {}".format(thisFName))
            output = self.doTempFile('reproject', '.tif',
                                     self.dlg.editWrkDir.text())
            self.dictReproj[thisFName] = output
            if self.doResample(thisFName, output) == False:
                self.logMsg("Reprojection failed for {}".format(thisFName))
                return False

        # now compute indices
        if self.doIndices() == False:
            self.logMsg("Error in processing indices")
            return False

        return True

    # ____________________
    def doCheckToGo(self):

        #if (self.selectedRoi) is None:
        #    self.logMsg("Please choose a region, in the 'Settings' tab.")
        #    self.dlg.logTextDump.append("Please choose a region, in the 'Settings' tab.")
        #    self.dlg.tabWidget.setCurrentWidget(self.dlg.logTextDump)
        #    return False
        self.logMsg("Checking inputs")
        # clipping vector is now mandatory
        if self.dlg.editClipShp.text() == '':
            self.logMsg(
                "You must define a clipping vector (for example a shapefile)",
                QgsMessageLog.CRITICAL)
            self.dlg.tabWidget.setCurrentWidget(self.dlg.logTextDump)
            return False

        # check all files are different
        listFName = [ii.source() for ii in self.raster_list]
        if self.uniquify(listFName) != listFName:
            self.logMsg(
                "Input files must be different. Please revise inputs in 'Input files' tab.",
                QgsMessageLog.CRITICAL)
            tabWidget.setCurrentWidget(self.dlg.logTextDump)

        self.listIDInputs = {
            'VGT': self.dlg.comboVegetationIndex.currentText(),
            'RFE': self.dlg.comboRainfallErosivity.currentText(),
            'PopDens': self.dlg.comboPopDensity.currentText(),
            'SoilErod': self.dlg.comboSoilErodibility.currentText(),
            'SlopeLF': self.dlg.comboSlopeLF.currentText()
        }

        self.listIDWeightsPotential = {
            'RFE': self.dlg.spinPotRFE.value(),
            'PopDens': self.dlg.spinPotPopDens.value(),
            'SoilErod': self.dlg.spinPotSoilErod.value(),
            'SlopeLF': self.dlg.spinPotSlopeLF.value()
        }

        self.listIDWeightsActual = {
            'VGT': self.dlg.spinActVGT.value(),
            'RFE': self.dlg.spinActRFE.value(),
            'PopDens': self.dlg.spinActPopDens.value(),
            'SoilErod': self.dlg.spinActSoilErod.value(),
            'SlopeLF': self.dlg.spinActSlopeLF.value()
        }

        return True

    # _____________________
    #def displayRoiValues(self):
    #    if self.dlg.comboChooseArea.currentIndex() is None:
    #        return
    #    elif self.dlg.comboChooseArea.currentIndex() == -1:
    #        self.dlg.RoiWestEdit.clear()
    #        self.dlg.RoiEastEdit.clear()
    #        self.dlg.RoiSouthEdit.clear()
    #        self.dlg.RoiNorthEdit.clear()
    #    else:
    #        listRoiNames = []
    #        listRoiNames = [ ii["name"] for ii in self.roiDefinitions ]
    #        self.selectedRoi = listRoiNames[self.dlg.comboChooseArea.currentIndex()]
    #        # West, xmin, roiXY[0]
    #        self.dlg.RoiWestEdit.setText( "%12.7f" % [ f["roiXY"][0] for f in self.roiDefinitions if (f["name"]==self.selectedRoi) ][0]  )
    #        self.dlg.RoiWestEdit.displayText
    #        # East, xmax, roiXY[2]
    #        self.dlg.RoiEastEdit.setText( "%12.7f" % [ f["roiXY"][2] for f in self.roiDefinitions if (f["name"]==self.selectedRoi) ][0]  )
    #        self.dlg.RoiEastEdit.displayText
    #        # South, ymin, roiXY[1]
    #        self.dlg.RoiSouthEdit.setText( "%12.7f" % [ f["roiXY"][1] for f in self.roiDefinitions if (f["name"]==self.selectedRoi) ][0]  )
    #        self.dlg.RoiEastEdit.displayText
    #        # North ymax, roiXY[3]
    #        self.dlg.RoiNorthEdit.setText( "%12.7f" % [ f["roiXY"][3] for f in self.roiDefinitions if (f["name"]==self.selectedRoi) ][0]  )
    #        self.dlg.RoiEastEdit.displayText
    #
    #    return True
    # _____________________
    # add a filename to the list of opened files
    # anf move the index to the last opened file
    def openFile(self, name):
        text = {
            'SHPCLIP': 'clipping vector file',
            'VGT': 'Vegetation',
            'RFE': 'Rainfall erosivity',
            'PopDens': 'Population density',
            'SoilErod': 'Soil Erodibility',
            'SlopeLF': 'Slope length'
        }
        ltype = {
            'SHPCLIP': 'vector',
            'VGT': 'raster',
            'RFE': 'raster',
            'PopDens': 'raster',
            'SoilErod': 'raster',
            'SlopeLF': 'raster'
        }
        dialog = QFileDialog()
        fname = dialog.getOpenFileName(self.dlg, self.tr("Open raster file"))
        if fname == '':
            return True

        if ltype[name] == 'raster':
            layer = QgsRasterLayer(fname, name)
            if not layer.isValid():
                self.logMsg("Could not open this file")
                self.dlg.logTextDump.append(
                    "Could not open file {}".format(name))
                self.dlg.tabWidget.setCurrentWidget(self.dlg.logTextDump)
                return False
            self.raster_list.append(layer)

        if ltype[name] == 'vector':
            layer = QgsVectorLayer(fname, "Clip", 'ogr')
            if not layer.isValid():
                self.logMsg(
                    "Could not load vector layer {} with {}".format(
                        layer.name(), fname), QgsMessageLog.WARNING)
                self.dlg.logTextDump.append(
                    "Could not load vector layer {}".format(fname))
                self.dlg.setCurrentWidget(self.logTextDump)
                return False
            self.clipLayer = layer

        # now put it in the correct list and make it the current selection
        if name == 'VGT':
            self.dlg.comboVegetationIndex.addItem(name)
            self.dlg.comboVegetationIndex.setCurrentIndex(
                self.dlg.comboVegetationIndex.count() - 1)
        elif name == 'RFE':
            self.dlg.comboRainfallErosivity.addItem(fname)
            self.dlg.comboRainfallErosivity.setCurrentIndex(
                self.dlg.comboRainfallErosivity.count() - 1)
        elif name == 'PopDens':
            self.dlg.comboPopDensity.addItem(fname)
            self.dlg.comboPopDensity.setCurrentIndex(
                self.dlg.comboPopDensity.count() - 1)
        elif name == 'SoilErod':
            self.dlg.comboSoilErodibility.addItem(fname)
            self.dlg.comboSoilErodibility.setCurrentIndex(
                self.dlg.comboSoilErodibility.count() - 1)
        elif name == 'SlopeLF':
            self.dlg.comboSlopeLF.addItem(fname)
            self.dlg.comboSlopeLF.setCurrentIndex(
                self.dlg.comboSlopeLF.count() - 1)
        elif name == 'SHPCLIP':
            self.dlg.editClipShp.setText(fname)
        return True

    # ____________________
    def saveFile(self, selector):
        text = {'PotLDIM': 'Potential LDIM', 'ActLDIM': 'Actual LDIM'}
        dialog = QFileDialog()
        fname = dialog.getSaveFileName(
            self.dlg,
            self.tr("Define a file name to save {}".format(text[selector])),
            os.path.expanduser("~"))

        if fname:
            # be sure to append '.tif'
            pathname, extension = os.path.splitext(fname)
            if extension != '.tif':
                fname = pathname + '.tif'

            if selector == 'PotLDIM':
                self.dlg.editOutPLDI.setText(fname)
            if selector == 'ActLDIM':
                self.dlg.editOutALDI.setText(fname)

        return True

    # ___________________
    def TR_degEdited(self):
        # spot VGT has pixel centered coordinates and considers 112 pixels per degrees
        # for pixel corners coordinates, one considers 111 pixels per degrees
        # convert into meters
        self.dlg.spinTR_m.setValue(self.dlg.spinTR_deg.value() * 111.0 *
                                   1000.0)

    def TR_mEdited(self):
        # convert into degrees
        self.dlg.spinTR_deg.setValue(self.dlg.spinTR_m.value() /
                                     (1000.0 * 111.0))

    #____________________
    def saveDir(self, selector):
        text = {'WrkDir': 'intermediate processing'}
        dialog = QFileDialog()
        dname = dialog.getExistingDirectory(
            self.dlg,
            self.tr("Choose a directory to save {}".format(text[selector])),
            os.path.expanduser("~"))
        if dname:
            if selector == 'WrkDir':
                self.dlg.editWrkDir.setText(dname)

    # ___________________
#    def doClipShpWidgetsUpdate(self):
#        if self.dlg.checkClipShp.isChecked():
#            self.dlg.editClipShp.setEnabled(True)
#            self.dlg.buttonClipShp.setEnabled(True)
#        else:
#            self.dlg.editClipShp.setEnabled(False)
#            self.dlg.buttonClipShp.setEnabled(False)
# ____________________

    def doInitGUI(self):

        self.raster_list = []
        self.dictInput = {}
        self.dictReproj = {}

        # clear files selectors
        #self.dlg.comboChooseArea.clear()
        self.dlg.comboVegetationIndex.clear()
        self.dlg.comboPopDensity.clear()
        self.dlg.comboRainfallErosivity.clear()
        self.dlg.comboSlopeLF.clear()
        self.dlg.comboSoilErodibility.clear()
        # do not clear messages tab: so we can read messages from the former run

        # if wrkDir not set, then initialise, else leave it as it is
        if self.dlg.editWrkDir.text() == '':
            self.dlg.editWrkDir.setText(self.dlg.editWrkDir.text())

        # force opening on the "Help" tab
        self.dlg.tabWidget.setCurrentWidget(self.dlg.tabHelp)

        # setup "settings" tools. ROI are defined with xMin, yMin, xMax, yMax
        #self.dlg.comboChooseArea.addItems( [ ii["name"] for ii in self.roiDefinitions ] )
        #for ii in self.roiDefinitions:
        #    self.dlg.logTextDump.append( ii["name"] )
        #self.dlg.comboChooseArea.currentIndexChanged.connect(self.displayRoiValues)
        #self.dlg.comboChooseArea.setCurrentIndex(-1)
        #self.displayRoiValues()

        # connect the file chooser function to the buttons
        self.dlg.buttonVegetationIndex.clicked.connect(
            lambda: self.openFile('VGT'))
        self.dlg.buttonRainfallErosivity.clicked.connect(
            lambda: self.openFile('RFE'))
        self.dlg.buttonPopDensity.clicked.connect(
            lambda: self.openFile('PopDens'))
        self.dlg.buttonErodibility.clicked.connect(
            lambda: self.openFile('SoilErod'))
        self.dlg.buttonSlopeLF.clicked.connect(
            lambda: self.openFile('SlopeLF'))

        # connect buttons to saveFile functions
        self.dlg.buttonPotLDIM.clicked.connect(
            lambda: self.saveFile('PotLDIM'))
        self.dlg.buttonActLDIM.clicked.connect(
            lambda: self.saveFile('ActLDIM'))

        # define temp directory
        self.dlg.editWrkDir.setText(
            os.path.join(os.path.expanduser("~"), "qgis_rcmrdplugin"))
        self.dlg.buttonWrkDir.clicked.connect(lambda: self.saveDir('WrkDir'))

        # pixel resolution control
        self.dlg.spinTR_m.setValue(100.0)
        self.dlg.spinTR_deg.setValue(100.0 / (1000.0 * 111.0))
        self.dlg.spinTR_m.valueChanged.connect(self.TR_mEdited)
        self.dlg.spinTR_deg.valueChanged.connect(self.TR_degEdited)

        # signals for clipShp widgets
        #self.dlg.checkClipShp.stateChanged.connect( self.doClipShpWidgetsUpdate )
        self.dlg.buttonClipShp.clicked.connect(
            (lambda: self.openFile('SHPCLIP')))

    # ____________________
    def run(self):
        """Set up the interface content and call business-logic functions"""

        self.doInitGUI()

        # setup input files
        self.dlg.logTextDump.append("Scanning loaded files")
        layers = self.iface.legendInterface().layers()
        vector_list = []
        self.raster_list = []  # reset to 0 each time the plugin is called

        # detect vectors and rasters already loaded in QGis
        for layer in layers:
            layerType = layer.type()

            if (layerType == QgsMapLayer.VectorLayer) and (layer.wkbType()
                                                           == QGis.WKBPolygon):
                vector_list.append(layer.name())
                QgsMessageLog.logMessage("--- Vector")
                #QgsMessageLog.logMessage(str(dir(layer)))
                print layer.geometryType()
                QgsMessageLog.logMessage('Vector: ' + str(layer.name()) + ' ' +
                                         str(layer.geometryType()))
            if layerType == QgsMapLayer.RasterLayer:
                self.raster_list.append(layer)

        # Assign the pre-loaded rasters and vectors to the interface objects
        for ii in self.raster_list:
            self.dlg.comboVegetationIndex.addItem(ii.name())
            self.dlg.comboPopDensity.addItem(ii.name())
            self.dlg.comboRainfallErosivity.addItem(ii.name())
            self.dlg.comboSlopeLF.addItem(ii.name())
            self.dlg.comboSoilErodibility.addItem(ii.name())

        # show the dialog
        self.dlg.show()
        self.dlg.logTextDump.append("Waiting for settings")
        # Run the dialog event loop, and exit only if all check are ok
        checkToGo = False
        result = False
        while not checkToGo:
            result = self.dlg.exec_()
            if result:
                checkToGo = self.doCheckToGo()
            else:
                checkToGo = True
        #self.dlg.logTextDump.append("Application running.")
        #self.iface.messageBar().pushMessage("Info","Running")

        # See if OK was pressed
        self.logMsg("Result {} checktogo {}".format(result, checkToGo))
        if result:
            # then run processings
            if self.doProcessing():
                self.iface.addRasterLayer(unicode(self.dlg.editOutPLDI.text()),
                                          'Potential LDIM')
                self.iface.addRasterLayer(unicode(self.dlg.editOutALDI.text()),
                                          'Actual LDIM')
 def setUp(self):
     """Runs before each test."""
     self.dialog = RCMRD_LandDegrDialog(None)