def main(args):
"""Usage: print_NUML input-filename
"""
if len(args) != 2:
print(main.__doc__)
sys.exit(1)
doc = libnuml.readNUML(args[1])
if (doc.getErrorLog().getNumFailsWithSeverity(libnuml.LIBNUML_SEV_ERROR) >
0):
# print doc.getErrorLog().toString();
sys.exit(2)
# NUMLReader reader = new NUMLReader();
# NUMLWriter writer = new NUMLWriter();
level = doc.getLevel()
version = doc.getVersion()
print("File:", args[1])
print("Level", level, " version ", version, ")")
nOTerms = doc.getNumOntologyTerms()
nRComps = doc.getNumResultComponents()
print("Number of ontologyTerms in this document: ", nOTerms)
print("Number of resultComponent in this document: ", nRComps)
oTerms = doc.getOntologyTerms()
rComps = doc.getResultComponents()
if oTerms is None:
print("No OntologyTerms present.")
sys.exit(2)
#print all the ontologyTerms
print("No.\t Term \t Source Term Id \t Ontology URI")
for i in range(0, nOTerms):
oTerm = oTerms.get(i)
print("", i + 1, "\t", oTerm.getTerm(), "\t", oTerm.getSourceTermId(),
"\t", oTerm.getOntologyURI())
if rComps is None:
print("No ResultComponents present.")
sys.exit(2)
# print the ResultComponents
print("Number of ResultComponents ", nRComps)
for i in range(0, nRComps):
print("Result Component:", i + 1)
print("Name of ResultComponent: ",
rComps.get(i).getId())
rComp = rComps.get(i)
sys.exit(0)
def main (args):
"""Usage: print_NUML input-filename
"""
if len(args) != 2:
print(main.__doc__)
sys.exit(1)
doc = libnuml.readNUML(args[1]);
if ( doc.getErrorLog().getNumFailsWithSeverity(libnuml.LIBNUML_SEV_ERROR) > 0):
# print doc.getErrorLog().toString();
sys.exit(2);
# NUMLReader reader = new NUMLReader();
# NUMLWriter writer = new NUMLWriter();
level = doc.getLevel();
version = doc.getVersion();
print ("File:" , args[1]);
print ("Level" , level , " version ", version, ")");
nOTerms = doc.getNumOntologyTerms();
nRComps = doc.getNumResultComponents();
print ("Number of ontologyTerms in this document: ", nOTerms);
print ("Number of resultComponent in this document: " , nRComps);
oTerms = doc.getOntologyTerms();
rComps = doc.getResultComponents();
if oTerms is None:
print ("No OntologyTerms present.");
sys.exit(2);
#print all the ontologyTerms
print ("No.\t Term \t Source Term Id \t Ontology URI");
for i in range(0, nOTerms):
oTerm = oTerms.get(i);
print("", i+1,"\t", oTerm.getTerm(), "\t", oTerm.getSourceTermId(), "\t", oTerm.getOntologyURI());
if rComps is None:
print ("No ResultComponents present.");
sys.exit(2);
# print the ResultComponents
print ("Number of ResultComponents ", nRComps);
for i in range(0, nRComps):
print("Result Component:", i+1);
print("Name of ResultComponent: ", rComps.get(i).getId());
rComp = rComps.get(i);
sys.exit(0);
def main (args):
"""Usage: echo_numl input-filename output-filename
"""
if len(args) != 3:
print(main.__doc__)
sys.exit(1)
doc = libnuml.readNUML(args[1]);
##if ( doc.getErrorLog().getNumFailsWithSeverity(libsedml.LIBSNUML_SEV_ERROR) > 0):
## print doc.getErrorLog().toString();
## else:
libnuml.writeNUML(doc, args[2]);
return 0;
def main(args):
"""Usage: echo_numl input-filename output-filename
"""
if len(args) != 3:
print(main.__doc__)
sys.exit(1)
doc = libnuml.readNUML(args[1])
##if ( doc.getErrorLog().getNumFailsWithSeverity(libsedml.LIBSNUML_SEV_ERROR) > 0):
## print doc.getErrorLog().toString();
## else:
libnuml.writeNUML(doc, args[2])
return 0
