def main(args): """Usage: print_NUML input-filename """ if len(args) != 2: print(main.__doc__) sys.exit(1) doc = libnuml.readNUML(args[1]) if (doc.getErrorLog().getNumFailsWithSeverity(libnuml.LIBNUML_SEV_ERROR) > 0): # print doc.getErrorLog().toString(); sys.exit(2) # NUMLReader reader = new NUMLReader(); # NUMLWriter writer = new NUMLWriter(); level = doc.getLevel() version = doc.getVersion() print("File:", args[1]) print("Level", level, " version ", version, ")") nOTerms = doc.getNumOntologyTerms() nRComps = doc.getNumResultComponents() print("Number of ontologyTerms in this document: ", nOTerms) print("Number of resultComponent in this document: ", nRComps) oTerms = doc.getOntologyTerms() rComps = doc.getResultComponents() if oTerms is None: print("No OntologyTerms present.") sys.exit(2) #print all the ontologyTerms print("No.\t Term \t Source Term Id \t Ontology URI") for i in range(0, nOTerms): oTerm = oTerms.get(i) print("", i + 1, "\t", oTerm.getTerm(), "\t", oTerm.getSourceTermId(), "\t", oTerm.getOntologyURI()) if rComps is None: print("No ResultComponents present.") sys.exit(2) # print the ResultComponents print("Number of ResultComponents ", nRComps) for i in range(0, nRComps): print("Result Component:", i + 1) print("Name of ResultComponent: ", rComps.get(i).getId()) rComp = rComps.get(i) sys.exit(0)
def main (args): """Usage: print_NUML input-filename """ if len(args) != 2: print(main.__doc__) sys.exit(1) doc = libnuml.readNUML(args[1]); if ( doc.getErrorLog().getNumFailsWithSeverity(libnuml.LIBNUML_SEV_ERROR) > 0): # print doc.getErrorLog().toString(); sys.exit(2); # NUMLReader reader = new NUMLReader(); # NUMLWriter writer = new NUMLWriter(); level = doc.getLevel(); version = doc.getVersion(); print ("File:" , args[1]); print ("Level" , level , " version ", version, ")"); nOTerms = doc.getNumOntologyTerms(); nRComps = doc.getNumResultComponents(); print ("Number of ontologyTerms in this document: ", nOTerms); print ("Number of resultComponent in this document: " , nRComps); oTerms = doc.getOntologyTerms(); rComps = doc.getResultComponents(); if oTerms is None: print ("No OntologyTerms present."); sys.exit(2); #print all the ontologyTerms print ("No.\t Term \t Source Term Id \t Ontology URI"); for i in range(0, nOTerms): oTerm = oTerms.get(i); print("", i+1,"\t", oTerm.getTerm(), "\t", oTerm.getSourceTermId(), "\t", oTerm.getOntologyURI()); if rComps is None: print ("No ResultComponents present."); sys.exit(2); # print the ResultComponents print ("Number of ResultComponents ", nRComps); for i in range(0, nRComps): print("Result Component:", i+1); print("Name of ResultComponent: ", rComps.get(i).getId()); rComp = rComps.get(i); sys.exit(0);
def main (args): """Usage: echo_numl input-filename output-filename """ if len(args) != 3: print(main.__doc__) sys.exit(1) doc = libnuml.readNUML(args[1]); ##if ( doc.getErrorLog().getNumFailsWithSeverity(libsedml.LIBSNUML_SEV_ERROR) > 0): ## print doc.getErrorLog().toString(); ## else: libnuml.writeNUML(doc, args[2]); return 0;
def main(args): """Usage: echo_numl input-filename output-filename """ if len(args) != 3: print(main.__doc__) sys.exit(1) doc = libnuml.readNUML(args[1]) ##if ( doc.getErrorLog().getNumFailsWithSeverity(libsedml.LIBSNUML_SEV_ERROR) > 0): ## print doc.getErrorLog().toString(); ## else: libnuml.writeNUML(doc, args[2]) return 0