def test_Node_assignmentOperator(self): att = libsbml.XMLAttributes() t = libsbml.XMLTriple("sarah", "http://foo.org/", "bar") token = libsbml.XMLToken(t,att,3,4) node = libsbml.XMLNode(token) child = libsbml.XMLNode() node.addChild(child) self.assert_( node.getNumChildren() == 1 ) self.assert_( node.getName() == "sarah" ) self.assert_( node.getURI() == "http://foo.org/" ) self.assert_( node.getPrefix() == "bar" ) self.assert_( node.isEnd() == False ) self.assert_( node.isEOF() == False ) self.assert_( node.getLine() == 3 ) self.assert_( node.getColumn() == 4 ) node2 = libsbml.XMLNode() node2 = node self.assert_( node2.getNumChildren() == 1 ) self.assert_( node2.getName() == "sarah" ) self.assert_( node2.getURI() == "http://foo.org/" ) self.assert_( node2.getPrefix() == "bar" ) self.assert_( node2.isEnd() == False ) self.assert_( node2.isEOF() == False ) self.assert_( node2.getLine() == 3 ) self.assert_( node2.getColumn() == 4 ) t = None token = None node = None node2 = None pass
def test_Constraint_copyConstructor(self): o1 = libsbml.Constraint(2,4) o1.setMetaId("c") self.assert_( o1.getMetaId() == "c" ) text = libsbml.XMLNode.convertStringToXMLNode(" Some text ") triple = libsbml.XMLTriple("p", "http://www.w3.org/1999/xhtml", "") att = libsbml.XMLAttributes() xmlns = libsbml.XMLNamespaces() xmlns.add("http://www.w3.org/1999/xhtml") p = libsbml.XMLNode(triple,att,xmlns) p.addChild(text) triple1 = libsbml.XMLTriple("message", "", "") att1 = libsbml.XMLAttributes() message = libsbml.XMLNode(triple1,att1) message.addChild(p) math = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(math) o1.setMessage(message) math = None message = None self.assert_( o1.getMath() != None ) msg = o1.getMessage() self.assert_( msg != None ) o2 = libsbml.Constraint(o1) self.assert_( o2.getMetaId() == "c" ) self.assert_( o2.getMath() != None ) msg = o2.getMessage() self.assert_( msg != None ) self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass
def test_XMLNode_create(self): node = libsbml.XMLNode() self.assert_(node != None) self.assert_(node.getNumChildren() == 0) _dummyList = [node] _dummyList[:] = [] del _dummyList node = libsbml.XMLNode() self.assert_(node != None) node2 = libsbml.XMLNode() self.assert_(node2 != None) node.addChild(node2) self.assert_(node.getNumChildren() == 1) node3 = libsbml.XMLNode() self.assert_(node3 != None) node.addChild(node3) self.assert_(node.getNumChildren() == 2) _dummyList = [node] _dummyList[:] = [] del _dummyList _dummyList = [node2] _dummyList[:] = [] del _dummyList _dummyList = [node3] _dummyList[:] = [] del _dummyList pass
def test_Constraint_setMessage(self): text = libsbml.XMLNode.convertStringToXMLNode(" Some text ", None) triple = libsbml.XMLTriple("p", "http://www.w3.org/1999/xhtml", "") att = libsbml.XMLAttributes() xmlns = libsbml.XMLNamespaces() xmlns.add("http://www.w3.org/1999/xhtml", "") p = libsbml.XMLNode(triple, att, xmlns) p.addChild(text) triple1 = libsbml.XMLTriple("message", "", "") att1 = libsbml.XMLAttributes() node = libsbml.XMLNode(triple1, att1) node.addChild(p) self.C.setMessage(node) self.assert_(self.C.getMessage() != node) self.assert_(self.C.isSetMessage() == True) self.C.setMessage(self.C.getMessage()) self.assert_(self.C.getMessage() != node) self.assert_(self.C.getMessageString() != None) self.C.unsetMessage() self.assertEqual(False, self.C.isSetMessage()) if (self.C.getMessage() != None): pass _dummyList = [node] _dummyList[:] = [] del _dummyList pass
def test_CVTerm_createFromNode(self): qual_triple = libsbml.XMLTriple("is", "", "bqbiol") bag_triple = libsbml.XMLTriple() li_triple = libsbml.XMLTriple() att = libsbml.XMLAttributes() att.add("", "This is my resource") att1 = libsbml.XMLAttributes() li_token = libsbml.XMLToken(li_triple, att) bag_token = libsbml.XMLToken(bag_triple, att1) qual_token = libsbml.XMLToken(qual_triple, att1) li = libsbml.XMLNode(li_token) bag = libsbml.XMLNode(bag_token) node = libsbml.XMLNode(qual_token) bag.addChild(li) node.addChild(bag) term = libsbml.CVTerm(node) self.assert_(term != None) self.assert_(term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER) self.assert_(term.getBiologicalQualifierType() == libsbml.BQB_IS) xa = term.getResources() self.assert_(xa.getLength() == 1) self.assert_(("rdf:resource" == xa.getName(0))) self.assert_(("This is my resource" == xa.getValue(0))) _dummyList = [qual_triple] _dummyList[:] = [] del _dummyList _dummyList = [bag_triple] _dummyList[:] = [] del _dummyList _dummyList = [li_triple] _dummyList[:] = [] del _dummyList _dummyList = [li_token] _dummyList[:] = [] del _dummyList _dummyList = [bag_token] _dummyList[:] = [] del _dummyList _dummyList = [qual_token] _dummyList[:] = [] del _dummyList _dummyList = [att] _dummyList[:] = [] del _dummyList _dummyList = [att1] _dummyList[:] = [] del _dummyList _dummyList = [term] _dummyList[:] = [] del _dummyList _dummyList = [node] _dummyList[:] = [] del _dummyList _dummyList = [bag] _dummyList[:] = [] del _dummyList _dummyList = [li] _dummyList[:] = [] del _dummyList pass
def add_annotation_complex(model, model_id, participants): species = model.getSpecies(model_id) xmlns = libsbml.XMLNamespaces() xmlns.add('http://www.w3.org/1999/02/22-rdf-syntax-ns#', 'rdf') rdf_triple = libsbml.XMLTriple( 'RDF', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', 'rdf') rdf_token = libsbml.XMLToken(rdf_triple, libsbml.XMLAttributes(), xmlns) annotation = libsbml.XMLNode(rdf_token) if species: participants_xml_triple = libsbml.XMLTriple( 'Participants', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', 'rdf') participants_xml_token = \ libsbml.XMLToken(participants_xml_triple, libsbml.XMLAttributes()) participants_xml_node = libsbml.XMLNode(participants_xml_token) participant_xml_triple = libsbml.XMLTriple( 'Participant', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', 'rdf') for iii in participants: resource_att = libsbml.XMLAttributes() resource_att.add('participant', str(iii)) subject_token = libsbml.XMLToken(participant_xml_triple, resource_att) subject_token.setEnd() participants_xml_node.addChild(libsbml.XMLNode(subject_token)) annotation.addChild(participants_xml_node) species.appendAnnotation(annotation)
def test_XMLNode_addChild1(self): node = libsbml.XMLNode() node2 = libsbml.XMLNode() i = node.addChild(node2) self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getNumChildren() == 1 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ node2 ]; _dummyList[:] = []; del _dummyList pass
def test_RDFAnnotation_testMissingAbout(self): withAbout = wrapString( "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n" + " <annotation>\n" + " <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" + " <rdf:Description rdf:about=\"#_000004\">\n" + " <bqbiol:is>\n" + " <rdf:Bag>\n" + " <rdf:li rdf:resource=\"http://www.geneontology.org/#GO:0007274\"/>\n" + " </rdf:Bag>\n" + " </bqbiol:is>\n" + " </rdf:Description>\n" + " </rdf:RDF>\n" + " </annotation>") emptyAbout = wrapString( "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n" + " <annotation>\n" + " <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" + " <rdf:Description rdf:about=\"\">\n" + " <bqbiol:is>\n" + " <rdf:Bag>\n" + " <rdf:li rdf:resource=\"http://www.geneontology.org/#GO:0007274\"/>\n" + " </rdf:Bag>\n" + " </bqbiol:is>\n" + " </rdf:Description>\n" + " </rdf:RDF>\n" + " </annotation>") noAbout = wrapString( "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n" + " <annotation>\n" + " <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" + " <rdf:Description>\n" + " <bqbiol:is>\n" + " <rdf:Bag>\n" + " <rdf:li rdf:resource=\"http://www.geneontology.org/#GO:0007274\"/>\n" + " </rdf:Bag>\n" + " </bqbiol:is>\n" + " </rdf:Description>\n" + " </rdf:RDF>\n" + " </annotation>") cvTerms = libsbml.CVTermList() stream = libsbml.XMLInputStream(withAbout, False) node = libsbml.XMLNode(stream) libsbml.RDFAnnotationParser.parseRDFAnnotation(node, cvTerms) self.assert_(cvTerms.getSize() == 1) cvTerms = None cvTerms = libsbml.CVTermList() libsbml.RDFAnnotationParser.parseRDFAnnotation(node, cvTerms) self.assert_(cvTerms.getSize() == 1) cvTerms = None cvTerms = None cvTerms = libsbml.CVTermList() stream1 = libsbml.XMLInputStream(emptyAbout, False) node1 = libsbml.XMLNode(stream1) libsbml.RDFAnnotationParser.parseRDFAnnotation(node1, cvTerms) self.assert_(cvTerms.getSize() == 0) cvTerms = None cvTerms = None cvTerms = libsbml.CVTermList() stream2 = libsbml.XMLInputStream(noAbout, False) node2 = libsbml.XMLNode(stream2) libsbml.RDFAnnotationParser.parseRDFAnnotation(node2, cvTerms) self.assert_(cvTerms.getSize() == 0) cvTerms = None cvTerms = None pass
def test_XMLNode_addChild3(self): triple = libsbml.XMLTriple("test","","") node = libsbml.XMLNode(triple) node2 = libsbml.XMLNode() i = node.addChild(node2) self.assert_( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) self.assert_( node.getNumChildren() == 0 ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ node2 ]; _dummyList[:] = []; del _dummyList pass
def test_XMLNode_addChild2(self): triple = libsbml.XMLTriple("test","","") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple,attr) node2 = libsbml.XMLNode() i = node.addChild(node2) self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getNumChildren() == 1 ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ node2 ]; _dummyList[:] = []; del _dummyList pass
def test_XMLNode_clearNamespaces(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple, attr) i = node.addNamespace("http://test1.org/", "test1") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) nms = node.getNamespaces() self.assert_(nms.getLength() == 1) i = node.addNamespace("http://test2.org/", "test2") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) nms = node.getNamespaces() self.assert_(nms.getLength() == 2) i = node.clearNamespaces() self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) nms = node.getNamespaces() self.assert_(nms.getLength() == 0) _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList _dummyList = [node] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_clearAttributes(self): triple = libsbml.XMLTriple("test","","") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple,attr) xt2 = libsbml.XMLTriple("name3", "http://name3.org/", "p3") xt1 = libsbml.XMLTriple("name5", "http://name5.org/", "p5") i = node.addAttr( "name1", "val1") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getAttributes().getLength() == 1 ) i = node.addAttr( "name2", "val2", "http://name1.org/", "p1") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getAttributes().getLength() == 2 ) i = node.addAttr(xt2, "val2") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getAttributes().getLength() == 3 ) i = node.addAttr( "name4", "val4") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getAttributes().getLength() == 4 ) i = node.clearAttributes() self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getAttributes().getLength() == 0 ) _dummyList = [ xt1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass
def _setConstraintsXml(self, type, lower, upper): """ @since: 2012-01-25 """ if not self._constraintsXmlNode: # have to create the XML node constraintsNodeTriplet = libsbml.XMLTriple(XML_CONSTRAINTS, XML_CONSTRAINTS_NAMESPACE, "") constraintsNodeAttribute = libsbml.XMLAttributes() constraintsNodeAttribute.add(XML_CONSTRAINTS_TYPE, str(type)) constraintsNodeAttribute.add(XML_CONSTRAINTS_LOWERBOUND, str(lower)) constraintsNodeAttribute.add(XML_CONSTRAINTS_UPPERBOUND, str(upper)) self._constraintsXmlNode = libsbml.XMLNode(constraintsNodeTriplet, constraintsNodeAttribute) namespace = libsbml.XMLNamespaces() # seems to be necessary to do this again namespace.add(XML_CONSTRAINTS_NAMESPACE) self._constraintsXmlNode.setNamespaces(namespace) self.Item.appendAnnotation(self._constraintsXmlNode) else: constraintsNodeAttribute = libsbml.XMLAttributes() constraintsNodeAttribute.add(XML_CONSTRAINTS_TYPE, str(type)) constraintsNodeAttribute.add(XML_CONSTRAINTS_LOWERBOUND, str(lower)) constraintsNodeAttribute.add(XML_CONSTRAINTS_UPPERBOUND, str(upper)) self._constraintsXmlNode.setAttributes(constraintsNodeAttribute)
def test_XMLNode_namespace_add(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple, attr) self.assert_(node.getNamespacesLength() == 0) self.assert_(node.isNamespacesEmpty() == True) node.addNamespace("http://test1.org/", "test1") self.assert_(node.getNamespacesLength() == 1) self.assert_(node.isNamespacesEmpty() == False) node.addNamespace("http://test2.org/", "test2") self.assert_(node.getNamespacesLength() == 2) self.assert_(node.isNamespacesEmpty() == False) node.addNamespace("http://test1.org/", "test1a") self.assert_(node.getNamespacesLength() == 3) self.assert_(node.isNamespacesEmpty() == False) node.addNamespace("http://test1.org/", "test1a") self.assert_(node.getNamespacesLength() == 3) self.assert_(node.isNamespacesEmpty() == False) self.assert_( (node.getNamespaceIndex("http://test1.org/") == -1) == False) _dummyList = [node] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_removeNamespaces(self): triple = libsbml.XMLTriple("test","","") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple,attr) i = node.addNamespace( "http://test1.org/", "test1") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() self.assert_( nms.getLength() == 1 ) i = node.addNamespace( "http://test2.org/", "test2") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() self.assert_( nms.getLength() == 2 ) i = node.removeNamespace(7) self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) nms = node.getNamespaces() self.assert_( nms.getLength() == 2 ) i = node.removeNamespace( "name7") self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) nms = node.getNamespaces() self.assert_( nms.getLength() == 2 ) i = node.removeNamespace(0) self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() self.assert_( nms.getLength() == 1 ) i = node.removeNamespace( "test2") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() self.assert_( nms.getLength() == 0 ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass
def _setThresholdXml(self, value): """ Uses the value to update the internal libsbml.XMLNode structure. If there is a reference to an existing XML node (from loading the file) it is used. Otherwise, it's created. @since: 2011-05-23 """ if not self.thresholdNode: # have to create the XML node thresholdNodeTriplet = libsbml.XMLTriple(XML_SCALE, XML_THRESHOLD_NAMESPACE, "") thresholdNodeAttribute = libsbml.XMLAttributes() thresholdNodeAttribute.add(XML_THRESHOLD_VALUE, str(value)) self.thresholdNode = libsbml.XMLNode(thresholdNodeTriplet, thresholdNodeAttribute) namespace = libsbml.XMLNamespaces( ) # seems to be necessary to do this again namespace.add(XML_THRESHOLD_NAMESPACE) self.thresholdNode.setNamespaces(namespace) self.Item.appendAnnotation(self.thresholdNode) else: thresholdNodeAttribute = libsbml.XMLAttributes() thresholdNodeAttribute.add(XML_THRESHOLD_VALUE, str(value)) self.thresholdNode.setAttributes(thresholdNodeAttribute)
def test_XMLNode_namespace_get(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple, attr) node.addNamespace("http://test1.org/", "test1") node.addNamespace("http://test2.org/", "test2") node.addNamespace("http://test3.org/", "test3") node.addNamespace("http://test4.org/", "test4") node.addNamespace("http://test5.org/", "test5") node.addNamespace("http://test6.org/", "test6") node.addNamespace("http://test7.org/", "test7") node.addNamespace("http://test8.org/", "test8") node.addNamespace("http://test9.org/", "test9") self.assert_(node.getNamespacesLength() == 9) self.assert_(node.getNamespaceIndex("http://test1.org/") == 0) self.assert_(("test2" != node.getNamespacePrefix(1)) == False) self.assert_( ("test1" != node.getNamespacePrefix("http://test1.org/")) == False) self.assert_(("http://test2.org/" != node.getNamespaceURI(1)) == False) self.assert_( ("http://test2.org/" != node.getNamespaceURI("test2")) == False) self.assert_(node.getNamespaceIndex("http://test1.org/") == 0) self.assert_(node.getNamespaceIndex("http://test2.org/") == 1) self.assert_(node.getNamespaceIndex("http://test5.org/") == 4) self.assert_(node.getNamespaceIndex("http://test9.org/") == 8) self.assert_(node.getNamespaceIndex("http://testX.org/") == -1) self.assert_(node.hasNamespaceURI("http://test1.org/") != False) self.assert_(node.hasNamespaceURI("http://test2.org/") != False) self.assert_(node.hasNamespaceURI("http://test5.org/") != False) self.assert_(node.hasNamespaceURI("http://test9.org/") != False) self.assert_(node.hasNamespaceURI("http://testX.org/") == False) self.assert_(node.getNamespaceIndexByPrefix("test1") == 0) self.assert_(node.getNamespaceIndexByPrefix("test5") == 4) self.assert_(node.getNamespaceIndexByPrefix("test9") == 8) self.assert_(node.getNamespaceIndexByPrefix("testX") == -1) self.assert_(node.hasNamespacePrefix("test1") != False) self.assert_(node.hasNamespacePrefix("test5") != False) self.assert_(node.hasNamespacePrefix("test9") != False) self.assert_(node.hasNamespacePrefix("testX") == False) self.assert_( node.hasNamespaceNS("http://test1.org/", "test1") != False) self.assert_( node.hasNamespaceNS("http://test5.org/", "test5") != False) self.assert_( node.hasNamespaceNS("http://test9.org/", "test9") != False) self.assert_( node.hasNamespaceNS("http://testX.org/", "testX") == False) _dummyList = [node] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList pass
def rFromFlux(flux): fluxSBML = libsbml.XMLNode() triple = libsbml.XMLTriple("flux", "", "") att = libsbml.XMLAttributes() att.add( "forward", str(flux.forward) ) # Forcing string conversion to invoke __str__ for rangedNumber att.add("backward", str(flux.backward)) att.add("net", str(flux.net)) att.add("exchange", str(flux.exchange)) ns = libsbml.XMLNamespaces() token = libsbml.XMLToken(triple, att, ns) fluxNode = libsbml.XMLNode(token) fluxSBML.addChild(fluxNode) return [fluxSBML]
def test_XMLNode_removeAttributes(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple, attr) xt2 = libsbml.XMLTriple("name3", "http://name3.org/", "p3") xt1 = libsbml.XMLTriple("name5", "http://name5.org/", "p5") i = node.addAttr("name1", "val1") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 1) i = node.addAttr("name2", "val2", "http://name1.org/", "p1") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 2) i = node.addAttr(xt2, "val2") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 3) i = node.addAttr("name4", "val4") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 4) i = node.removeAttr(7) self.assert_(i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE) i = node.removeAttr("name7") self.assert_(i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE) i = node.removeAttr("name7", "namespaces7") self.assert_(i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE) i = node.removeAttr(xt1) self.assert_(i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE) self.assert_(node.getAttributes().getLength() == 4) i = node.removeAttr(3) self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 3) i = node.removeAttr("name1") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 2) i = node.removeAttr("name2", "http://name1.org/") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 1) i = node.removeAttr(xt2) self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 0) _dummyList = [xt1] _dummyList[:] = [] del _dummyList _dummyList = [xt2] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList _dummyList = [node] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_removeChildren(self): node = libsbml.XMLNode() node2 = libsbml.XMLNode() node3 = libsbml.XMLNode() node.addChild(node2) node.addChild(node3) self.assert_(node.getNumChildren() == 2) i = node.removeChildren() self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getNumChildren() == 0) _dummyList = [node] _dummyList[:] = [] del _dummyList _dummyList = [node2] _dummyList[:] = [] del _dummyList _dummyList = [node3] _dummyList[:] = [] del _dummyList pass
def test_SyntaxChecker_validXHTML(self): NS24 = libsbml.SBMLNamespaces(2,4) NS31 = libsbml.SBMLNamespaces(3,1) toptriple = libsbml.XMLTriple("notes", "", "") triple = libsbml.XMLTriple("p", "", "") att = libsbml.XMLAttributes() ns = libsbml.XMLNamespaces() ns.add( "http://www.w3.org/1999/xhtml", "") tt = libsbml.XMLToken("This is my text") n1 = libsbml.XMLNode(tt) toptoken = libsbml.XMLToken(toptriple,att) topnode = libsbml.XMLNode(toptoken) token = libsbml.XMLToken(triple,att,ns) node = libsbml.XMLNode(token) node.addChild(n1) topnode.addChild(node) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == True ) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == True ) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == True ) triple = libsbml.XMLTriple("html", "", "") token = libsbml.XMLToken(triple,att,ns) node = libsbml.XMLNode(token) node.addChild(n1) topnode.removeChild(0) topnode.addChild(node) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == True ) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == False ) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == True ) triple = libsbml.XMLTriple("html", "", "") ns.clear() token = libsbml.XMLToken(triple,att,ns) node = libsbml.XMLNode(token) node.addChild(n1) topnode.removeChild(0) topnode.addChild(node) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == False ) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == False ) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == False ) pass
def test_Constraint_setMessage1(self): node = libsbml.XMLNode() i = self.C.setMessage(node) self.assert_(i == libsbml.LIBSBML_INVALID_OBJECT) self.assert_(self.C.isSetMessage() == False) i = self.C.unsetMessage() self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assertEqual(False, self.C.isSetMessage()) if (self.C.getMessage() != None): pass _dummyList = [node] _dummyList[:] = [] del _dummyList pass
def test_ASTNode_addSemanticsAnnotation(self): ann = libsbml.XMLNode() node = libsbml.ASTNode() i = 0 i = node.addSemanticsAnnotation(ann) self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getNumSemanticsAnnotations() == 1) i = node.addSemanticsAnnotation(None) self.assert_(i == libsbml.LIBSBML_OPERATION_FAILED) self.assert_(node.getNumSemanticsAnnotations() == 1) _dummyList = [node] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_getters(self): NS = libsbml.XMLNamespaces() NS.add("http://test1.org/", "test1") token = libsbml.XMLToken("This is a test") node = libsbml.XMLNode(token) self.assert_(node != None) self.assert_(node.getNumChildren() == 0) self.assert_(("This is a test" != node.getCharacters()) == False) self.assert_(node.getChild(1) != None) attr = libsbml.XMLAttributes() self.assert_(attr != None) attr.add("attr2", "value") triple = libsbml.XMLTriple("attr", "uri", "prefix") token = libsbml.XMLToken(triple, attr) self.assert_(token != None) node = libsbml.XMLNode(token) self.assert_(("attr" != node.getName()) == False) self.assert_(("uri" != node.getURI()) == False) self.assert_(("prefix" != node.getPrefix()) == False) returnattr = node.getAttributes() self.assert_(("attr2" != returnattr.getName(0)) == False) self.assert_(("value" != returnattr.getValue(0)) == False) token = libsbml.XMLToken(triple, attr, NS) node = libsbml.XMLNode(token) returnNS = node.getNamespaces() self.assert_(returnNS.getLength() == 1) self.assert_(returnNS.isEmpty() == False) _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [token] _dummyList[:] = [] del _dummyList _dummyList = [node] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_namespace_remove(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple, attr) node.addNamespace("http://test1.org/", "test1") node.addNamespace("http://test2.org/", "test2") node.addNamespace("http://test3.org/", "test3") node.addNamespace("http://test4.org/", "test4") node.addNamespace("http://test5.org/", "test5") self.assert_(node.getNamespacesLength() == 5) node.removeNamespace(4) self.assert_(node.getNamespacesLength() == 4) node.removeNamespace(3) self.assert_(node.getNamespacesLength() == 3) node.removeNamespace(2) self.assert_(node.getNamespacesLength() == 2) node.removeNamespace(1) self.assert_(node.getNamespacesLength() == 1) node.removeNamespace(0) self.assert_(node.getNamespacesLength() == 0) node.addNamespace("http://test1.org/", "test1") node.addNamespace("http://test2.org/", "test2") node.addNamespace("http://test3.org/", "test3") node.addNamespace("http://test4.org/", "test4") node.addNamespace("http://test5.org/", "test5") self.assert_(node.getNamespacesLength() == 5) node.removeNamespace(0) self.assert_(node.getNamespacesLength() == 4) node.removeNamespace(0) self.assert_(node.getNamespacesLength() == 3) node.removeNamespace(0) self.assert_(node.getNamespacesLength() == 2) node.removeNamespace(0) self.assert_(node.getNamespacesLength() == 1) node.removeNamespace(0) self.assert_(node.getNamespacesLength() == 0) _dummyList = [node] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_createFromToken(self): triple = libsbml.XMLTriple("attr", "uri", "prefix") token = libsbml.XMLToken(triple) node = libsbml.XMLNode(token) self.assert_(node != None) self.assert_(node.getNumChildren() == 0) self.assert_(("attr" != node.getName()) == False) self.assert_(("prefix" != node.getPrefix()) == False) self.assert_(("uri" != node.getURI()) == False) self.assert_(node.getChild(1) != None) _dummyList = [token] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [node] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_namespace_set_clear(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple, attr) ns = libsbml.XMLNamespaces() self.assert_(node.getNamespacesLength() == 0) self.assert_(node.isNamespacesEmpty() == True) ns.add("http://test1.org/", "test1") ns.add("http://test2.org/", "test2") ns.add("http://test3.org/", "test3") ns.add("http://test4.org/", "test4") ns.add("http://test5.org/", "test5") node.setNamespaces(ns) self.assert_(node.getNamespacesLength() == 5) self.assert_(node.isNamespacesEmpty() == False) self.assert_(("test1" != node.getNamespacePrefix(0)) == False) self.assert_(("test2" != node.getNamespacePrefix(1)) == False) self.assert_(("test3" != node.getNamespacePrefix(2)) == False) self.assert_(("test4" != node.getNamespacePrefix(3)) == False) self.assert_(("test5" != node.getNamespacePrefix(4)) == False) self.assert_(("http://test1.org/" != node.getNamespaceURI(0)) == False) self.assert_(("http://test2.org/" != node.getNamespaceURI(1)) == False) self.assert_(("http://test3.org/" != node.getNamespaceURI(2)) == False) self.assert_(("http://test4.org/" != node.getNamespaceURI(3)) == False) self.assert_(("http://test5.org/" != node.getNamespaceURI(4)) == False) node.clearNamespaces() self.assert_(node.getNamespacesLength() == 0) self.assert_(node.isAttributesEmpty() != False) _dummyList = [ns] _dummyList[:] = [] del _dummyList _dummyList = [node] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_attribute_add_remove(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple, attr) xt1 = libsbml.XMLTriple("name1", "http://name1.org/", "p1") xt2 = libsbml.XMLTriple("name2", "http://name2.org/", "p2") xt3 = libsbml.XMLTriple("name3", "http://name3.org/", "p3") xt1a = libsbml.XMLTriple("name1", "http://name1a.org/", "p1a") xt2a = libsbml.XMLTriple("name2", "http://name2a.org/", "p2a") node.addAttr("name1", "val1", "http://name1.org/", "p1") node.addAttr(xt2, "val2") self.assert_(node.getAttributesLength() == 2) self.assert_(node.isAttributesEmpty() == False) self.assert_(("name1" != node.getAttrName(0)) == False) self.assert_(("val1" != node.getAttrValue(0)) == False) self.assert_(("http://name1.org/" != node.getAttrURI(0)) == False) self.assert_(("p1" != node.getAttrPrefix(0)) == False) self.assert_(("name2" != node.getAttrName(1)) == False) self.assert_(("val2" != node.getAttrValue(1)) == False) self.assert_(("http://name2.org/" != node.getAttrURI(1)) == False) self.assert_(("p2" != node.getAttrPrefix(1)) == False) self.assert_(node.getAttrValue("name1") == "") self.assert_(node.getAttrValue("name2") == "") self.assert_(("val1" != node.getAttrValue("name1", "http://name1.org/") ) == False) self.assert_(("val2" != node.getAttrValue("name2", "http://name2.org/") ) == False) self.assert_(("val1" != node.getAttrValue(xt1)) == False) self.assert_(("val2" != node.getAttrValue(xt2)) == False) self.assert_(node.hasAttr(-1) == False) self.assert_(node.hasAttr(2) == False) self.assert_(node.hasAttr(0) == True) self.assert_(node.hasAttr("name1", "http://name1.org/") == True) self.assert_(node.hasAttr("name2", "http://name2.org/") == True) self.assert_(node.hasAttr("name3", "http://name3.org/") == False) self.assert_(node.hasAttr(xt1) == True) self.assert_(node.hasAttr(xt2) == True) self.assert_(node.hasAttr(xt3) == False) node.addAttr("noprefix", "val3") self.assert_(node.getAttributesLength() == 3) self.assert_(node.isAttributesEmpty() == False) self.assert_(("noprefix" != node.getAttrName(2)) == False) self.assert_(("val3" != node.getAttrValue(2)) == False) self.assert_(node.getAttrURI(2) == "") self.assert_(node.getAttrPrefix(2) == "") self.assert_(("val3" != node.getAttrValue("noprefix")) == False) self.assert_(("val3" != node.getAttrValue("noprefix", "")) == False) self.assert_(node.hasAttr("noprefix") == True) self.assert_(node.hasAttr("noprefix", "") == True) node.addAttr(xt1, "mval1") node.addAttr("name2", "mval2", "http://name2.org/", "p2") self.assert_(node.getAttributesLength() == 3) self.assert_(node.isAttributesEmpty() == False) self.assert_(("name1" != node.getAttrName(0)) == False) self.assert_(("mval1" != node.getAttrValue(0)) == False) self.assert_(("http://name1.org/" != node.getAttrURI(0)) == False) self.assert_(("p1" != node.getAttrPrefix(0)) == False) self.assert_(("name2" != node.getAttrName(1)) == False) self.assert_(("mval2" != node.getAttrValue(1)) == False) self.assert_(("http://name2.org/" != node.getAttrURI(1)) == False) self.assert_(("p2" != node.getAttrPrefix(1)) == False) self.assert_(node.hasAttr(xt1) == True) self.assert_(node.hasAttr("name1", "http://name1.org/") == True) node.addAttr("noprefix", "mval3") self.assert_(node.getAttributesLength() == 3) self.assert_(node.isAttributesEmpty() == False) self.assert_(("noprefix" != node.getAttrName(2)) == False) self.assert_(("mval3" != node.getAttrValue(2)) == False) self.assert_(node.getAttrURI(2) == "") self.assert_(node.getAttrPrefix(2) == "") self.assert_(node.hasAttr("noprefix") == True) self.assert_(node.hasAttr("noprefix", "") == True) node.addAttr(xt1a, "val1a") node.addAttr(xt2a, "val2a") self.assert_(node.getAttributesLength() == 5) self.assert_(("name1" != node.getAttrName(3)) == False) self.assert_(("val1a" != node.getAttrValue(3)) == False) self.assert_(("http://name1a.org/" != node.getAttrURI(3)) == False) self.assert_(("p1a" != node.getAttrPrefix(3)) == False) self.assert_(("name2" != node.getAttrName(4)) == False) self.assert_(("val2a" != node.getAttrValue(4)) == False) self.assert_(("http://name2a.org/" != node.getAttrURI(4)) == False) self.assert_(("p2a" != node.getAttrPrefix(4)) == False) self.assert_( ("val1a" != node.getAttrValue("name1", "http://name1a.org/") ) == False) self.assert_( ("val2a" != node.getAttrValue("name2", "http://name2a.org/") ) == False) self.assert_(("val1a" != node.getAttrValue(xt1a)) == False) self.assert_(("val2a" != node.getAttrValue(xt2a)) == False) node.removeAttr(xt1a) node.removeAttr(xt2a) self.assert_(node.getAttributesLength() == 3) node.removeAttr("name1", "http://name1.org/") self.assert_(node.getAttributesLength() == 2) self.assert_(node.isAttributesEmpty() == False) self.assert_(("name2" != node.getAttrName(0)) == False) self.assert_(("mval2" != node.getAttrValue(0)) == False) self.assert_(("http://name2.org/" != node.getAttrURI(0)) == False) self.assert_(("p2" != node.getAttrPrefix(0)) == False) self.assert_(("noprefix" != node.getAttrName(1)) == False) self.assert_(("mval3" != node.getAttrValue(1)) == False) self.assert_(node.getAttrURI(1) == "") self.assert_(node.getAttrPrefix(1) == "") self.assert_(node.hasAttr("name1", "http://name1.org/") == False) node.removeAttr(xt2) self.assert_(node.getAttributesLength() == 1) self.assert_(node.isAttributesEmpty() == False) self.assert_(("noprefix" != node.getAttrName(0)) == False) self.assert_(("mval3" != node.getAttrValue(0)) == False) self.assert_(node.getAttrURI(0) == "") self.assert_(node.getAttrPrefix(0) == "") self.assert_(node.hasAttr(xt2) == False) self.assert_(node.hasAttr("name2", "http://name2.org/") == False) node.removeAttr("noprefix") self.assert_(node.getAttributesLength() == 0) self.assert_(node.isAttributesEmpty() == True) self.assert_(node.hasAttr("noprefix") == False) self.assert_(node.hasAttr("noprefix", "") == False) _dummyList = [node] _dummyList[:] = [] del _dummyList _dummyList = [xt1] _dummyList[:] = [] del _dummyList _dummyList = [xt2] _dummyList[:] = [] del _dummyList _dummyList = [xt3] _dummyList[:] = [] del _dummyList _dummyList = [xt1a] _dummyList[:] = [] del _dummyList _dummyList = [xt2a] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_remove(self): attr = libsbml.XMLAttributes() trp_p = libsbml.XMLTriple("parent", "", "") trp_c1 = libsbml.XMLTriple("child1", "", "") trp_c2 = libsbml.XMLTriple("child2", "", "") trp_c3 = libsbml.XMLTriple("child3", "", "") trp_c4 = libsbml.XMLTriple("child4", "", "") trp_c5 = libsbml.XMLTriple("child5", "", "") p = libsbml.XMLNode(trp_p, attr) c1 = libsbml.XMLNode(trp_c1, attr) c2 = libsbml.XMLNode(trp_c2, attr) c3 = libsbml.XMLNode(trp_c3, attr) c4 = libsbml.XMLNode(trp_c4, attr) c5 = libsbml.XMLNode(trp_c5, attr) p.addChild(c1) p.addChild(c2) p.addChild(c3) p.addChild(c4) p.addChild(c5) r = p.removeChild(5) self.assert_(r == None) r = p.removeChild(1) self.assert_(p.getNumChildren() == 4) self.assert_(("child2" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(3) self.assert_(p.getNumChildren() == 3) self.assert_(("child5" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(0) self.assert_(p.getNumChildren() == 2) self.assert_(("child1" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(1) self.assert_(p.getNumChildren() == 1) self.assert_(("child4" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(0) self.assert_(p.getNumChildren() == 0) self.assert_(("child3" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList p.addChild(c1) p.addChild(c2) p.addChild(c3) p.addChild(c4) p.addChild(c5) r = p.removeChild(4) self.assert_(p.getNumChildren() == 4) self.assert_(("child5" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(3) self.assert_(p.getNumChildren() == 3) self.assert_(("child4" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(2) self.assert_(p.getNumChildren() == 2) self.assert_(("child3" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(1) self.assert_(p.getNumChildren() == 1) self.assert_(("child2" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(0) self.assert_(p.getNumChildren() == 0) self.assert_(("child1" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList p.addChild(c1) p.addChild(c2) p.addChild(c3) p.addChild(c4) p.addChild(c5) r = p.removeChild(0) self.assert_(p.getNumChildren() == 4) self.assert_(("child1" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(0) self.assert_(p.getNumChildren() == 3) self.assert_(("child2" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(0) self.assert_(p.getNumChildren() == 2) self.assert_(("child3" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(0) self.assert_(p.getNumChildren() == 1) self.assert_(("child4" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(0) self.assert_(p.getNumChildren() == 0) self.assert_(("child5" != r.getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList p.addChild(c1) p.addChild(c2) p.addChild(c3) p.addChild(c4) p.addChild(c5) r = p.removeChild(0) self.assert_(("child1" != r.getName()) == False) p.insertChild(0, r) self.assert_(p.getNumChildren() == 5) self.assert_(("child1" != p.getChild(0).getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(1) self.assert_(("child2" != r.getName()) == False) p.insertChild(1, r) self.assert_(p.getNumChildren() == 5) self.assert_(("child2" != p.getChild(1).getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(2) self.assert_(("child3" != r.getName()) == False) p.insertChild(2, r) self.assert_(p.getNumChildren() == 5) self.assert_(("child3" != p.getChild(2).getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(3) self.assert_(("child4" != r.getName()) == False) p.insertChild(3, r) self.assert_(p.getNumChildren() == 5) self.assert_(("child4" != p.getChild(3).getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList r = p.removeChild(4) self.assert_(("child5" != r.getName()) == False) p.insertChild(4, r) self.assert_(p.getNumChildren() == 5) self.assert_(("child5" != p.getChild(4).getName()) == False) _dummyList = [r] _dummyList[:] = [] del _dummyList _dummyList = [p] _dummyList[:] = [] del _dummyList _dummyList = [c1] _dummyList[:] = [] del _dummyList _dummyList = [c2] _dummyList[:] = [] del _dummyList _dummyList = [c3] _dummyList[:] = [] del _dummyList _dummyList = [c4] _dummyList[:] = [] del _dummyList _dummyList = [c5] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList _dummyList = [trp_p] _dummyList[:] = [] del _dummyList _dummyList = [trp_c1] _dummyList[:] = [] del _dummyList _dummyList = [trp_c2] _dummyList[:] = [] del _dummyList _dummyList = [trp_c3] _dummyList[:] = [] del _dummyList _dummyList = [trp_c4] _dummyList[:] = [] del _dummyList _dummyList = [trp_c5] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_createElement(self): name = "test" uri = "http://test.org/" prefix = "p" text = "text node" triple = libsbml.XMLTriple(name, uri, prefix) ns = libsbml.XMLNamespaces() attr = libsbml.XMLAttributes() ns.add(uri, prefix) attr.add("id", "value", uri, prefix) snode = libsbml.XMLNode(triple, attr, ns) self.assert_(snode != None) self.assert_(snode.getNumChildren() == 0) self.assert_((name != snode.getName()) == False) self.assert_((prefix != snode.getPrefix()) == False) self.assert_((uri != snode.getURI()) == False) self.assert_(snode.isElement() == True) self.assert_(snode.isStart() == True) self.assert_(snode.isEnd() == False) self.assert_(snode.isText() == False) snode.setEnd() self.assert_(snode.isEnd() == True) snode.unsetEnd() self.assert_(snode.isEnd() == False) cattr = snode.getAttributes() self.assert_(cattr != None) self.assert_(("id" != cattr.getName(0)) == False) self.assert_(("value" != cattr.getValue(0)) == False) self.assert_((prefix != cattr.getPrefix(0)) == False) self.assert_((uri != cattr.getURI(0)) == False) _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList _dummyList = [ns] _dummyList[:] = [] del _dummyList _dummyList = [snode] _dummyList[:] = [] del _dummyList attr = libsbml.XMLAttributes() attr.add("id", "value") triple = libsbml.XMLTriple(name, "", "") snode = libsbml.XMLNode(triple, attr) self.assert_(snode != None) self.assert_(snode.getNumChildren() == 0) self.assert_(("test" != snode.getName()) == False) self.assert_(snode.getPrefix() == "") self.assert_(snode.getURI() == "") self.assert_(snode.isElement() == True) self.assert_(snode.isStart() == True) self.assert_(snode.isEnd() == False) self.assert_(snode.isText() == False) cattr = snode.getAttributes() self.assert_(cattr != None) self.assert_(("id" != cattr.getName(0)) == False) self.assert_(("value" != cattr.getValue(0)) == False) self.assert_(cattr.getPrefix(0) == "") self.assert_(cattr.getURI(0) == "") enode = libsbml.XMLNode(triple) self.assert_(enode != None) self.assert_(enode.getNumChildren() == 0) self.assert_(("test" != enode.getName()) == False) self.assert_(enode.getPrefix() == "") self.assert_(enode.getURI() == "") self.assert_(enode.isElement() == True) self.assert_(enode.isStart() == False) self.assert_(enode.isEnd() == True) self.assert_(enode.isText() == False) tnode = libsbml.XMLNode(text) self.assert_(tnode != None) self.assert_((text != tnode.getCharacters()) == False) self.assert_(tnode.getNumChildren() == 0) self.assert_(tnode.getName() == "") self.assert_(tnode.getPrefix() == "") self.assert_(tnode.getURI() == "") self.assert_(tnode.isElement() == False) self.assert_(tnode.isStart() == False) self.assert_(tnode.isEnd() == False) self.assert_(tnode.isText() == True) _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList _dummyList = [snode] _dummyList[:] = [] del _dummyList _dummyList = [enode] _dummyList[:] = [] del _dummyList _dummyList = [tnode] _dummyList[:] = [] del _dummyList pass