def test_Node_assignmentOperator(self):
att = libsbml.XMLAttributes()
t = libsbml.XMLTriple("sarah", "http://foo.org/", "bar")
token = libsbml.XMLToken(t,att,3,4)
node = libsbml.XMLNode(token)
child = libsbml.XMLNode()
node.addChild(child)
self.assert_( node.getNumChildren() == 1 )
self.assert_( node.getName() == "sarah" )
self.assert_( node.getURI() == "http://foo.org/" )
self.assert_( node.getPrefix() == "bar" )
self.assert_( node.isEnd() == False )
self.assert_( node.isEOF() == False )
self.assert_( node.getLine() == 3 )
self.assert_( node.getColumn() == 4 )
node2 = libsbml.XMLNode()
node2 = node
self.assert_( node2.getNumChildren() == 1 )
self.assert_( node2.getName() == "sarah" )
self.assert_( node2.getURI() == "http://foo.org/" )
self.assert_( node2.getPrefix() == "bar" )
self.assert_( node2.isEnd() == False )
self.assert_( node2.isEOF() == False )
self.assert_( node2.getLine() == 3 )
self.assert_( node2.getColumn() == 4 )
t = None
token = None
node = None
node2 = None
pass
def test_Constraint_copyConstructor(self):
o1 = libsbml.Constraint(2,4)
o1.setMetaId("c")
self.assert_( o1.getMetaId() == "c" )
text = libsbml.XMLNode.convertStringToXMLNode(" Some text ")
triple = libsbml.XMLTriple("p", "http://www.w3.org/1999/xhtml", "")
att = libsbml.XMLAttributes()
xmlns = libsbml.XMLNamespaces()
xmlns.add("http://www.w3.org/1999/xhtml")
p = libsbml.XMLNode(triple,att,xmlns)
p.addChild(text)
triple1 = libsbml.XMLTriple("message", "", "")
att1 = libsbml.XMLAttributes()
message = libsbml.XMLNode(triple1,att1)
message.addChild(p)
math = libsbml.ASTNode(libsbml.AST_CONSTANT_PI)
o1.setMath(math)
o1.setMessage(message)
math = None
message = None
self.assert_( o1.getMath() != None )
msg = o1.getMessage()
self.assert_( msg != None )
o2 = libsbml.Constraint(o1)
self.assert_( o2.getMetaId() == "c" )
self.assert_( o2.getMath() != None )
msg = o2.getMessage()
self.assert_( msg != None )
self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() )
o2 = None
o1 = None
pass
def test_XMLNode_create(self):
node = libsbml.XMLNode()
self.assert_(node != None)
self.assert_(node.getNumChildren() == 0)
_dummyList = [node]
_dummyList[:] = []
del _dummyList
node = libsbml.XMLNode()
self.assert_(node != None)
node2 = libsbml.XMLNode()
self.assert_(node2 != None)
node.addChild(node2)
self.assert_(node.getNumChildren() == 1)
node3 = libsbml.XMLNode()
self.assert_(node3 != None)
node.addChild(node3)
self.assert_(node.getNumChildren() == 2)
_dummyList = [node]
_dummyList[:] = []
del _dummyList
_dummyList = [node2]
_dummyList[:] = []
del _dummyList
_dummyList = [node3]
_dummyList[:] = []
del _dummyList
pass
def test_Constraint_setMessage(self):
text = libsbml.XMLNode.convertStringToXMLNode(" Some text ", None)
triple = libsbml.XMLTriple("p", "http://www.w3.org/1999/xhtml", "")
att = libsbml.XMLAttributes()
xmlns = libsbml.XMLNamespaces()
xmlns.add("http://www.w3.org/1999/xhtml", "")
p = libsbml.XMLNode(triple, att, xmlns)
p.addChild(text)
triple1 = libsbml.XMLTriple("message", "", "")
att1 = libsbml.XMLAttributes()
node = libsbml.XMLNode(triple1, att1)
node.addChild(p)
self.C.setMessage(node)
self.assert_(self.C.getMessage() != node)
self.assert_(self.C.isSetMessage() == True)
self.C.setMessage(self.C.getMessage())
self.assert_(self.C.getMessage() != node)
self.assert_(self.C.getMessageString() != None)
self.C.unsetMessage()
self.assertEqual(False, self.C.isSetMessage())
if (self.C.getMessage() != None):
pass
_dummyList = [node]
_dummyList[:] = []
del _dummyList
pass
def test_CVTerm_createFromNode(self):
qual_triple = libsbml.XMLTriple("is", "", "bqbiol")
bag_triple = libsbml.XMLTriple()
li_triple = libsbml.XMLTriple()
att = libsbml.XMLAttributes()
att.add("", "This is my resource")
att1 = libsbml.XMLAttributes()
li_token = libsbml.XMLToken(li_triple, att)
bag_token = libsbml.XMLToken(bag_triple, att1)
qual_token = libsbml.XMLToken(qual_triple, att1)
li = libsbml.XMLNode(li_token)
bag = libsbml.XMLNode(bag_token)
node = libsbml.XMLNode(qual_token)
bag.addChild(li)
node.addChild(bag)
term = libsbml.CVTerm(node)
self.assert_(term != None)
self.assert_(term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER)
self.assert_(term.getBiologicalQualifierType() == libsbml.BQB_IS)
xa = term.getResources()
self.assert_(xa.getLength() == 1)
self.assert_(("rdf:resource" == xa.getName(0)))
self.assert_(("This is my resource" == xa.getValue(0)))
_dummyList = [qual_triple]
_dummyList[:] = []
del _dummyList
_dummyList = [bag_triple]
_dummyList[:] = []
del _dummyList
_dummyList = [li_triple]
_dummyList[:] = []
del _dummyList
_dummyList = [li_token]
_dummyList[:] = []
del _dummyList
_dummyList = [bag_token]
_dummyList[:] = []
del _dummyList
_dummyList = [qual_token]
_dummyList[:] = []
del _dummyList
_dummyList = [att]
_dummyList[:] = []
del _dummyList
_dummyList = [att1]
_dummyList[:] = []
del _dummyList
_dummyList = [term]
_dummyList[:] = []
del _dummyList
_dummyList = [node]
_dummyList[:] = []
del _dummyList
_dummyList = [bag]
_dummyList[:] = []
del _dummyList
_dummyList = [li]
_dummyList[:] = []
del _dummyList
pass
def add_annotation_complex(model, model_id, participants):
species = model.getSpecies(model_id)
xmlns = libsbml.XMLNamespaces()
xmlns.add('http://www.w3.org/1999/02/22-rdf-syntax-ns#', 'rdf')
rdf_triple = libsbml.XMLTriple(
'RDF', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', 'rdf')
rdf_token = libsbml.XMLToken(rdf_triple, libsbml.XMLAttributes(), xmlns)
annotation = libsbml.XMLNode(rdf_token)
if species:
participants_xml_triple = libsbml.XMLTriple(
'Participants', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#',
'rdf')
participants_xml_token = \
libsbml.XMLToken(participants_xml_triple,
libsbml.XMLAttributes())
participants_xml_node = libsbml.XMLNode(participants_xml_token)
participant_xml_triple = libsbml.XMLTriple(
'Participant', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#',
'rdf')
for iii in participants:
resource_att = libsbml.XMLAttributes()
resource_att.add('participant', str(iii))
subject_token = libsbml.XMLToken(participant_xml_triple,
resource_att)
subject_token.setEnd()
participants_xml_node.addChild(libsbml.XMLNode(subject_token))
annotation.addChild(participants_xml_node)
species.appendAnnotation(annotation)
def test_XMLNode_addChild1(self): node = libsbml.XMLNode() node2 = libsbml.XMLNode() i = node.addChild(node2) self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getNumChildren() == 1 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ node2 ]; _dummyList[:] = []; del _dummyList pass
def test_RDFAnnotation_testMissingAbout(self):
withAbout = wrapString(
"<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n" +
" <annotation>\n" +
" <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n"
+ " <rdf:Description rdf:about=\"#_000004\">\n" +
" <bqbiol:is>\n" + " <rdf:Bag>\n" +
" <rdf:li rdf:resource=\"http://www.geneontology.org/#GO:0007274\"/>\n"
+ " </rdf:Bag>\n" + " </bqbiol:is>\n" +
" </rdf:Description>\n" + " </rdf:RDF>\n" +
" </annotation>")
emptyAbout = wrapString(
"<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n" +
" <annotation>\n" +
" <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n"
+ " <rdf:Description rdf:about=\"\">\n" +
" <bqbiol:is>\n" + " <rdf:Bag>\n" +
" <rdf:li rdf:resource=\"http://www.geneontology.org/#GO:0007274\"/>\n"
+ " </rdf:Bag>\n" + " </bqbiol:is>\n" +
" </rdf:Description>\n" + " </rdf:RDF>\n" +
" </annotation>")
noAbout = wrapString(
"<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n" +
" <annotation>\n" +
" <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n"
+ " <rdf:Description>\n" + " <bqbiol:is>\n" +
" <rdf:Bag>\n" +
" <rdf:li rdf:resource=\"http://www.geneontology.org/#GO:0007274\"/>\n"
+ " </rdf:Bag>\n" + " </bqbiol:is>\n" +
" </rdf:Description>\n" + " </rdf:RDF>\n" +
" </annotation>")
cvTerms = libsbml.CVTermList()
stream = libsbml.XMLInputStream(withAbout, False)
node = libsbml.XMLNode(stream)
libsbml.RDFAnnotationParser.parseRDFAnnotation(node, cvTerms)
self.assert_(cvTerms.getSize() == 1)
cvTerms = None
cvTerms = libsbml.CVTermList()
libsbml.RDFAnnotationParser.parseRDFAnnotation(node, cvTerms)
self.assert_(cvTerms.getSize() == 1)
cvTerms = None
cvTerms = None
cvTerms = libsbml.CVTermList()
stream1 = libsbml.XMLInputStream(emptyAbout, False)
node1 = libsbml.XMLNode(stream1)
libsbml.RDFAnnotationParser.parseRDFAnnotation(node1, cvTerms)
self.assert_(cvTerms.getSize() == 0)
cvTerms = None
cvTerms = None
cvTerms = libsbml.CVTermList()
stream2 = libsbml.XMLInputStream(noAbout, False)
node2 = libsbml.XMLNode(stream2)
libsbml.RDFAnnotationParser.parseRDFAnnotation(node2, cvTerms)
self.assert_(cvTerms.getSize() == 0)
cvTerms = None
cvTerms = None
pass
def test_XMLNode_addChild3(self):
triple = libsbml.XMLTriple("test","","")
node = libsbml.XMLNode(triple)
node2 = libsbml.XMLNode()
i = node.addChild(node2)
self.assert_( i == libsbml.LIBSBML_INVALID_XML_OPERATION )
self.assert_( node.getNumChildren() == 0 )
_dummyList = [ triple ]; _dummyList[:] = []; del _dummyList
_dummyList = [ node ]; _dummyList[:] = []; del _dummyList
_dummyList = [ node2 ]; _dummyList[:] = []; del _dummyList
pass
def test_XMLNode_addChild2(self):
triple = libsbml.XMLTriple("test","","")
attr = libsbml.XMLAttributes()
node = libsbml.XMLNode(triple,attr)
node2 = libsbml.XMLNode()
i = node.addChild(node2)
self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS )
self.assert_( node.getNumChildren() == 1 )
_dummyList = [ triple ]; _dummyList[:] = []; del _dummyList
_dummyList = [ attr ]; _dummyList[:] = []; del _dummyList
_dummyList = [ node ]; _dummyList[:] = []; del _dummyList
_dummyList = [ node2 ]; _dummyList[:] = []; del _dummyList
pass
def test_XMLNode_clearNamespaces(self):
triple = libsbml.XMLTriple("test", "", "")
attr = libsbml.XMLAttributes()
node = libsbml.XMLNode(triple, attr)
i = node.addNamespace("http://test1.org/", "test1")
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
nms = node.getNamespaces()
self.assert_(nms.getLength() == 1)
i = node.addNamespace("http://test2.org/", "test2")
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
nms = node.getNamespaces()
self.assert_(nms.getLength() == 2)
i = node.clearNamespaces()
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
nms = node.getNamespaces()
self.assert_(nms.getLength() == 0)
_dummyList = [triple]
_dummyList[:] = []
del _dummyList
_dummyList = [attr]
_dummyList[:] = []
del _dummyList
_dummyList = [node]
_dummyList[:] = []
del _dummyList
pass
def test_XMLNode_clearAttributes(self):
triple = libsbml.XMLTriple("test","","")
attr = libsbml.XMLAttributes()
node = libsbml.XMLNode(triple,attr)
xt2 = libsbml.XMLTriple("name3", "http://name3.org/", "p3")
xt1 = libsbml.XMLTriple("name5", "http://name5.org/", "p5")
i = node.addAttr( "name1", "val1")
self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS )
self.assert_( node.getAttributes().getLength() == 1 )
i = node.addAttr( "name2", "val2", "http://name1.org/", "p1")
self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS )
self.assert_( node.getAttributes().getLength() == 2 )
i = node.addAttr(xt2, "val2")
self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS )
self.assert_( node.getAttributes().getLength() == 3 )
i = node.addAttr( "name4", "val4")
self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS )
self.assert_( node.getAttributes().getLength() == 4 )
i = node.clearAttributes()
self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS )
self.assert_( node.getAttributes().getLength() == 0 )
_dummyList = [ xt1 ]; _dummyList[:] = []; del _dummyList
_dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList
_dummyList = [ triple ]; _dummyList[:] = []; del _dummyList
_dummyList = [ attr ]; _dummyList[:] = []; del _dummyList
_dummyList = [ node ]; _dummyList[:] = []; del _dummyList
pass
def _setConstraintsXml(self, type, lower, upper):
"""
@since: 2012-01-25
"""
if not self._constraintsXmlNode: # have to create the XML node
constraintsNodeTriplet = libsbml.XMLTriple(XML_CONSTRAINTS, XML_CONSTRAINTS_NAMESPACE, "")
constraintsNodeAttribute = libsbml.XMLAttributes()
constraintsNodeAttribute.add(XML_CONSTRAINTS_TYPE, str(type))
constraintsNodeAttribute.add(XML_CONSTRAINTS_LOWERBOUND, str(lower))
constraintsNodeAttribute.add(XML_CONSTRAINTS_UPPERBOUND, str(upper))
self._constraintsXmlNode = libsbml.XMLNode(constraintsNodeTriplet, constraintsNodeAttribute)
namespace = libsbml.XMLNamespaces() # seems to be necessary to do this again
namespace.add(XML_CONSTRAINTS_NAMESPACE)
self._constraintsXmlNode.setNamespaces(namespace)
self.Item.appendAnnotation(self._constraintsXmlNode)
else:
constraintsNodeAttribute = libsbml.XMLAttributes()
constraintsNodeAttribute.add(XML_CONSTRAINTS_TYPE, str(type))
constraintsNodeAttribute.add(XML_CONSTRAINTS_LOWERBOUND, str(lower))
constraintsNodeAttribute.add(XML_CONSTRAINTS_UPPERBOUND, str(upper))
self._constraintsXmlNode.setAttributes(constraintsNodeAttribute)
def test_XMLNode_namespace_add(self):
triple = libsbml.XMLTriple("test", "", "")
attr = libsbml.XMLAttributes()
node = libsbml.XMLNode(triple, attr)
self.assert_(node.getNamespacesLength() == 0)
self.assert_(node.isNamespacesEmpty() == True)
node.addNamespace("http://test1.org/", "test1")
self.assert_(node.getNamespacesLength() == 1)
self.assert_(node.isNamespacesEmpty() == False)
node.addNamespace("http://test2.org/", "test2")
self.assert_(node.getNamespacesLength() == 2)
self.assert_(node.isNamespacesEmpty() == False)
node.addNamespace("http://test1.org/", "test1a")
self.assert_(node.getNamespacesLength() == 3)
self.assert_(node.isNamespacesEmpty() == False)
node.addNamespace("http://test1.org/", "test1a")
self.assert_(node.getNamespacesLength() == 3)
self.assert_(node.isNamespacesEmpty() == False)
self.assert_(
(node.getNamespaceIndex("http://test1.org/") == -1) == False)
_dummyList = [node]
_dummyList[:] = []
del _dummyList
_dummyList = [triple]
_dummyList[:] = []
del _dummyList
_dummyList = [attr]
_dummyList[:] = []
del _dummyList
pass
def test_XMLNode_removeNamespaces(self):
triple = libsbml.XMLTriple("test","","")
attr = libsbml.XMLAttributes()
node = libsbml.XMLNode(triple,attr)
i = node.addNamespace( "http://test1.org/", "test1")
self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS )
nms = node.getNamespaces()
self.assert_( nms.getLength() == 1 )
i = node.addNamespace( "http://test2.org/", "test2")
self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS )
nms = node.getNamespaces()
self.assert_( nms.getLength() == 2 )
i = node.removeNamespace(7)
self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE )
nms = node.getNamespaces()
self.assert_( nms.getLength() == 2 )
i = node.removeNamespace( "name7")
self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE )
nms = node.getNamespaces()
self.assert_( nms.getLength() == 2 )
i = node.removeNamespace(0)
self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS )
nms = node.getNamespaces()
self.assert_( nms.getLength() == 1 )
i = node.removeNamespace( "test2")
self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS )
nms = node.getNamespaces()
self.assert_( nms.getLength() == 0 )
_dummyList = [ triple ]; _dummyList[:] = []; del _dummyList
_dummyList = [ attr ]; _dummyList[:] = []; del _dummyList
_dummyList = [ node ]; _dummyList[:] = []; del _dummyList
pass
def _setThresholdXml(self, value):
"""
Uses the value to update the internal libsbml.XMLNode structure.
If there is a reference to an existing XML node (from loading the file)
it is used. Otherwise, it's created.
@since: 2011-05-23
"""
if not self.thresholdNode: # have to create the XML node
thresholdNodeTriplet = libsbml.XMLTriple(XML_SCALE,
XML_THRESHOLD_NAMESPACE,
"")
thresholdNodeAttribute = libsbml.XMLAttributes()
thresholdNodeAttribute.add(XML_THRESHOLD_VALUE, str(value))
self.thresholdNode = libsbml.XMLNode(thresholdNodeTriplet,
thresholdNodeAttribute)
namespace = libsbml.XMLNamespaces(
) # seems to be necessary to do this again
namespace.add(XML_THRESHOLD_NAMESPACE)
self.thresholdNode.setNamespaces(namespace)
self.Item.appendAnnotation(self.thresholdNode)
else:
thresholdNodeAttribute = libsbml.XMLAttributes()
thresholdNodeAttribute.add(XML_THRESHOLD_VALUE, str(value))
self.thresholdNode.setAttributes(thresholdNodeAttribute)
def test_XMLNode_namespace_get(self):
triple = libsbml.XMLTriple("test", "", "")
attr = libsbml.XMLAttributes()
node = libsbml.XMLNode(triple, attr)
node.addNamespace("http://test1.org/", "test1")
node.addNamespace("http://test2.org/", "test2")
node.addNamespace("http://test3.org/", "test3")
node.addNamespace("http://test4.org/", "test4")
node.addNamespace("http://test5.org/", "test5")
node.addNamespace("http://test6.org/", "test6")
node.addNamespace("http://test7.org/", "test7")
node.addNamespace("http://test8.org/", "test8")
node.addNamespace("http://test9.org/", "test9")
self.assert_(node.getNamespacesLength() == 9)
self.assert_(node.getNamespaceIndex("http://test1.org/") == 0)
self.assert_(("test2" != node.getNamespacePrefix(1)) == False)
self.assert_(
("test1" != node.getNamespacePrefix("http://test1.org/")) == False)
self.assert_(("http://test2.org/" != node.getNamespaceURI(1)) == False)
self.assert_(
("http://test2.org/" != node.getNamespaceURI("test2")) == False)
self.assert_(node.getNamespaceIndex("http://test1.org/") == 0)
self.assert_(node.getNamespaceIndex("http://test2.org/") == 1)
self.assert_(node.getNamespaceIndex("http://test5.org/") == 4)
self.assert_(node.getNamespaceIndex("http://test9.org/") == 8)
self.assert_(node.getNamespaceIndex("http://testX.org/") == -1)
self.assert_(node.hasNamespaceURI("http://test1.org/") != False)
self.assert_(node.hasNamespaceURI("http://test2.org/") != False)
self.assert_(node.hasNamespaceURI("http://test5.org/") != False)
self.assert_(node.hasNamespaceURI("http://test9.org/") != False)
self.assert_(node.hasNamespaceURI("http://testX.org/") == False)
self.assert_(node.getNamespaceIndexByPrefix("test1") == 0)
self.assert_(node.getNamespaceIndexByPrefix("test5") == 4)
self.assert_(node.getNamespaceIndexByPrefix("test9") == 8)
self.assert_(node.getNamespaceIndexByPrefix("testX") == -1)
self.assert_(node.hasNamespacePrefix("test1") != False)
self.assert_(node.hasNamespacePrefix("test5") != False)
self.assert_(node.hasNamespacePrefix("test9") != False)
self.assert_(node.hasNamespacePrefix("testX") == False)
self.assert_(
node.hasNamespaceNS("http://test1.org/", "test1") != False)
self.assert_(
node.hasNamespaceNS("http://test5.org/", "test5") != False)
self.assert_(
node.hasNamespaceNS("http://test9.org/", "test9") != False)
self.assert_(
node.hasNamespaceNS("http://testX.org/", "testX") == False)
_dummyList = [node]
_dummyList[:] = []
del _dummyList
_dummyList = [triple]
_dummyList[:] = []
del _dummyList
_dummyList = [attr]
_dummyList[:] = []
del _dummyList
pass
def rFromFlux(flux):
fluxSBML = libsbml.XMLNode()
triple = libsbml.XMLTriple("flux", "", "")
att = libsbml.XMLAttributes()
att.add(
"forward", str(flux.forward)
) # Forcing string conversion to invoke __str__ for rangedNumber
att.add("backward", str(flux.backward))
att.add("net", str(flux.net))
att.add("exchange", str(flux.exchange))
ns = libsbml.XMLNamespaces()
token = libsbml.XMLToken(triple, att, ns)
fluxNode = libsbml.XMLNode(token)
fluxSBML.addChild(fluxNode)
return [fluxSBML]
def test_XMLNode_removeAttributes(self):
triple = libsbml.XMLTriple("test", "", "")
attr = libsbml.XMLAttributes()
node = libsbml.XMLNode(triple, attr)
xt2 = libsbml.XMLTriple("name3", "http://name3.org/", "p3")
xt1 = libsbml.XMLTriple("name5", "http://name5.org/", "p5")
i = node.addAttr("name1", "val1")
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(node.getAttributes().getLength() == 1)
i = node.addAttr("name2", "val2", "http://name1.org/", "p1")
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(node.getAttributes().getLength() == 2)
i = node.addAttr(xt2, "val2")
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(node.getAttributes().getLength() == 3)
i = node.addAttr("name4", "val4")
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(node.getAttributes().getLength() == 4)
i = node.removeAttr(7)
self.assert_(i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE)
i = node.removeAttr("name7")
self.assert_(i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE)
i = node.removeAttr("name7", "namespaces7")
self.assert_(i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE)
i = node.removeAttr(xt1)
self.assert_(i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE)
self.assert_(node.getAttributes().getLength() == 4)
i = node.removeAttr(3)
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(node.getAttributes().getLength() == 3)
i = node.removeAttr("name1")
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(node.getAttributes().getLength() == 2)
i = node.removeAttr("name2", "http://name1.org/")
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(node.getAttributes().getLength() == 1)
i = node.removeAttr(xt2)
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(node.getAttributes().getLength() == 0)
_dummyList = [xt1]
_dummyList[:] = []
del _dummyList
_dummyList = [xt2]
_dummyList[:] = []
del _dummyList
_dummyList = [triple]
_dummyList[:] = []
del _dummyList
_dummyList = [attr]
_dummyList[:] = []
del _dummyList
_dummyList = [node]
_dummyList[:] = []
del _dummyList
pass
def test_XMLNode_removeChildren(self):
node = libsbml.XMLNode()
node2 = libsbml.XMLNode()
node3 = libsbml.XMLNode()
node.addChild(node2)
node.addChild(node3)
self.assert_(node.getNumChildren() == 2)
i = node.removeChildren()
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(node.getNumChildren() == 0)
_dummyList = [node]
_dummyList[:] = []
del _dummyList
_dummyList = [node2]
_dummyList[:] = []
del _dummyList
_dummyList = [node3]
_dummyList[:] = []
del _dummyList
pass
def test_SyntaxChecker_validXHTML(self):
NS24 = libsbml.SBMLNamespaces(2,4)
NS31 = libsbml.SBMLNamespaces(3,1)
toptriple = libsbml.XMLTriple("notes", "", "")
triple = libsbml.XMLTriple("p", "", "")
att = libsbml.XMLAttributes()
ns = libsbml.XMLNamespaces()
ns.add( "http://www.w3.org/1999/xhtml", "")
tt = libsbml.XMLToken("This is my text")
n1 = libsbml.XMLNode(tt)
toptoken = libsbml.XMLToken(toptriple,att)
topnode = libsbml.XMLNode(toptoken)
token = libsbml.XMLToken(triple,att,ns)
node = libsbml.XMLNode(token)
node.addChild(n1)
topnode.addChild(node)
self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == True )
self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == True )
self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == True )
triple = libsbml.XMLTriple("html", "", "")
token = libsbml.XMLToken(triple,att,ns)
node = libsbml.XMLNode(token)
node.addChild(n1)
topnode.removeChild(0)
topnode.addChild(node)
self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == True )
self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == False )
self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == True )
triple = libsbml.XMLTriple("html", "", "")
ns.clear()
token = libsbml.XMLToken(triple,att,ns)
node = libsbml.XMLNode(token)
node.addChild(n1)
topnode.removeChild(0)
topnode.addChild(node)
self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == False )
self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == False )
self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == False )
pass
def test_Constraint_setMessage1(self):
node = libsbml.XMLNode()
i = self.C.setMessage(node)
self.assert_(i == libsbml.LIBSBML_INVALID_OBJECT)
self.assert_(self.C.isSetMessage() == False)
i = self.C.unsetMessage()
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assertEqual(False, self.C.isSetMessage())
if (self.C.getMessage() != None):
pass
_dummyList = [node]
_dummyList[:] = []
del _dummyList
pass
def test_ASTNode_addSemanticsAnnotation(self):
ann = libsbml.XMLNode()
node = libsbml.ASTNode()
i = 0
i = node.addSemanticsAnnotation(ann)
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(node.getNumSemanticsAnnotations() == 1)
i = node.addSemanticsAnnotation(None)
self.assert_(i == libsbml.LIBSBML_OPERATION_FAILED)
self.assert_(node.getNumSemanticsAnnotations() == 1)
_dummyList = [node]
_dummyList[:] = []
del _dummyList
pass
def test_XMLNode_getters(self):
NS = libsbml.XMLNamespaces()
NS.add("http://test1.org/", "test1")
token = libsbml.XMLToken("This is a test")
node = libsbml.XMLNode(token)
self.assert_(node != None)
self.assert_(node.getNumChildren() == 0)
self.assert_(("This is a test" != node.getCharacters()) == False)
self.assert_(node.getChild(1) != None)
attr = libsbml.XMLAttributes()
self.assert_(attr != None)
attr.add("attr2", "value")
triple = libsbml.XMLTriple("attr", "uri", "prefix")
token = libsbml.XMLToken(triple, attr)
self.assert_(token != None)
node = libsbml.XMLNode(token)
self.assert_(("attr" != node.getName()) == False)
self.assert_(("uri" != node.getURI()) == False)
self.assert_(("prefix" != node.getPrefix()) == False)
returnattr = node.getAttributes()
self.assert_(("attr2" != returnattr.getName(0)) == False)
self.assert_(("value" != returnattr.getValue(0)) == False)
token = libsbml.XMLToken(triple, attr, NS)
node = libsbml.XMLNode(token)
returnNS = node.getNamespaces()
self.assert_(returnNS.getLength() == 1)
self.assert_(returnNS.isEmpty() == False)
_dummyList = [triple]
_dummyList[:] = []
del _dummyList
_dummyList = [token]
_dummyList[:] = []
del _dummyList
_dummyList = [node]
_dummyList[:] = []
del _dummyList
pass
def test_XMLNode_namespace_remove(self):
triple = libsbml.XMLTriple("test", "", "")
attr = libsbml.XMLAttributes()
node = libsbml.XMLNode(triple, attr)
node.addNamespace("http://test1.org/", "test1")
node.addNamespace("http://test2.org/", "test2")
node.addNamespace("http://test3.org/", "test3")
node.addNamespace("http://test4.org/", "test4")
node.addNamespace("http://test5.org/", "test5")
self.assert_(node.getNamespacesLength() == 5)
node.removeNamespace(4)
self.assert_(node.getNamespacesLength() == 4)
node.removeNamespace(3)
self.assert_(node.getNamespacesLength() == 3)
node.removeNamespace(2)
self.assert_(node.getNamespacesLength() == 2)
node.removeNamespace(1)
self.assert_(node.getNamespacesLength() == 1)
node.removeNamespace(0)
self.assert_(node.getNamespacesLength() == 0)
node.addNamespace("http://test1.org/", "test1")
node.addNamespace("http://test2.org/", "test2")
node.addNamespace("http://test3.org/", "test3")
node.addNamespace("http://test4.org/", "test4")
node.addNamespace("http://test5.org/", "test5")
self.assert_(node.getNamespacesLength() == 5)
node.removeNamespace(0)
self.assert_(node.getNamespacesLength() == 4)
node.removeNamespace(0)
self.assert_(node.getNamespacesLength() == 3)
node.removeNamespace(0)
self.assert_(node.getNamespacesLength() == 2)
node.removeNamespace(0)
self.assert_(node.getNamespacesLength() == 1)
node.removeNamespace(0)
self.assert_(node.getNamespacesLength() == 0)
_dummyList = [node]
_dummyList[:] = []
del _dummyList
_dummyList = [triple]
_dummyList[:] = []
del _dummyList
_dummyList = [attr]
_dummyList[:] = []
del _dummyList
pass
def test_XMLNode_createFromToken(self):
triple = libsbml.XMLTriple("attr", "uri", "prefix")
token = libsbml.XMLToken(triple)
node = libsbml.XMLNode(token)
self.assert_(node != None)
self.assert_(node.getNumChildren() == 0)
self.assert_(("attr" != node.getName()) == False)
self.assert_(("prefix" != node.getPrefix()) == False)
self.assert_(("uri" != node.getURI()) == False)
self.assert_(node.getChild(1) != None)
_dummyList = [token]
_dummyList[:] = []
del _dummyList
_dummyList = [triple]
_dummyList[:] = []
del _dummyList
_dummyList = [node]
_dummyList[:] = []
del _dummyList
pass
def test_XMLNode_namespace_set_clear(self):
triple = libsbml.XMLTriple("test", "", "")
attr = libsbml.XMLAttributes()
node = libsbml.XMLNode(triple, attr)
ns = libsbml.XMLNamespaces()
self.assert_(node.getNamespacesLength() == 0)
self.assert_(node.isNamespacesEmpty() == True)
ns.add("http://test1.org/", "test1")
ns.add("http://test2.org/", "test2")
ns.add("http://test3.org/", "test3")
ns.add("http://test4.org/", "test4")
ns.add("http://test5.org/", "test5")
node.setNamespaces(ns)
self.assert_(node.getNamespacesLength() == 5)
self.assert_(node.isNamespacesEmpty() == False)
self.assert_(("test1" != node.getNamespacePrefix(0)) == False)
self.assert_(("test2" != node.getNamespacePrefix(1)) == False)
self.assert_(("test3" != node.getNamespacePrefix(2)) == False)
self.assert_(("test4" != node.getNamespacePrefix(3)) == False)
self.assert_(("test5" != node.getNamespacePrefix(4)) == False)
self.assert_(("http://test1.org/" != node.getNamespaceURI(0)) == False)
self.assert_(("http://test2.org/" != node.getNamespaceURI(1)) == False)
self.assert_(("http://test3.org/" != node.getNamespaceURI(2)) == False)
self.assert_(("http://test4.org/" != node.getNamespaceURI(3)) == False)
self.assert_(("http://test5.org/" != node.getNamespaceURI(4)) == False)
node.clearNamespaces()
self.assert_(node.getNamespacesLength() == 0)
self.assert_(node.isAttributesEmpty() != False)
_dummyList = [ns]
_dummyList[:] = []
del _dummyList
_dummyList = [node]
_dummyList[:] = []
del _dummyList
_dummyList = [triple]
_dummyList[:] = []
del _dummyList
_dummyList = [attr]
_dummyList[:] = []
del _dummyList
pass
def test_XMLNode_attribute_add_remove(self):
triple = libsbml.XMLTriple("test", "", "")
attr = libsbml.XMLAttributes()
node = libsbml.XMLNode(triple, attr)
xt1 = libsbml.XMLTriple("name1", "http://name1.org/", "p1")
xt2 = libsbml.XMLTriple("name2", "http://name2.org/", "p2")
xt3 = libsbml.XMLTriple("name3", "http://name3.org/", "p3")
xt1a = libsbml.XMLTriple("name1", "http://name1a.org/", "p1a")
xt2a = libsbml.XMLTriple("name2", "http://name2a.org/", "p2a")
node.addAttr("name1", "val1", "http://name1.org/", "p1")
node.addAttr(xt2, "val2")
self.assert_(node.getAttributesLength() == 2)
self.assert_(node.isAttributesEmpty() == False)
self.assert_(("name1" != node.getAttrName(0)) == False)
self.assert_(("val1" != node.getAttrValue(0)) == False)
self.assert_(("http://name1.org/" != node.getAttrURI(0)) == False)
self.assert_(("p1" != node.getAttrPrefix(0)) == False)
self.assert_(("name2" != node.getAttrName(1)) == False)
self.assert_(("val2" != node.getAttrValue(1)) == False)
self.assert_(("http://name2.org/" != node.getAttrURI(1)) == False)
self.assert_(("p2" != node.getAttrPrefix(1)) == False)
self.assert_(node.getAttrValue("name1") == "")
self.assert_(node.getAttrValue("name2") == "")
self.assert_(("val1" != node.getAttrValue("name1", "http://name1.org/")
) == False)
self.assert_(("val2" != node.getAttrValue("name2", "http://name2.org/")
) == False)
self.assert_(("val1" != node.getAttrValue(xt1)) == False)
self.assert_(("val2" != node.getAttrValue(xt2)) == False)
self.assert_(node.hasAttr(-1) == False)
self.assert_(node.hasAttr(2) == False)
self.assert_(node.hasAttr(0) == True)
self.assert_(node.hasAttr("name1", "http://name1.org/") == True)
self.assert_(node.hasAttr("name2", "http://name2.org/") == True)
self.assert_(node.hasAttr("name3", "http://name3.org/") == False)
self.assert_(node.hasAttr(xt1) == True)
self.assert_(node.hasAttr(xt2) == True)
self.assert_(node.hasAttr(xt3) == False)
node.addAttr("noprefix", "val3")
self.assert_(node.getAttributesLength() == 3)
self.assert_(node.isAttributesEmpty() == False)
self.assert_(("noprefix" != node.getAttrName(2)) == False)
self.assert_(("val3" != node.getAttrValue(2)) == False)
self.assert_(node.getAttrURI(2) == "")
self.assert_(node.getAttrPrefix(2) == "")
self.assert_(("val3" != node.getAttrValue("noprefix")) == False)
self.assert_(("val3" != node.getAttrValue("noprefix", "")) == False)
self.assert_(node.hasAttr("noprefix") == True)
self.assert_(node.hasAttr("noprefix", "") == True)
node.addAttr(xt1, "mval1")
node.addAttr("name2", "mval2", "http://name2.org/", "p2")
self.assert_(node.getAttributesLength() == 3)
self.assert_(node.isAttributesEmpty() == False)
self.assert_(("name1" != node.getAttrName(0)) == False)
self.assert_(("mval1" != node.getAttrValue(0)) == False)
self.assert_(("http://name1.org/" != node.getAttrURI(0)) == False)
self.assert_(("p1" != node.getAttrPrefix(0)) == False)
self.assert_(("name2" != node.getAttrName(1)) == False)
self.assert_(("mval2" != node.getAttrValue(1)) == False)
self.assert_(("http://name2.org/" != node.getAttrURI(1)) == False)
self.assert_(("p2" != node.getAttrPrefix(1)) == False)
self.assert_(node.hasAttr(xt1) == True)
self.assert_(node.hasAttr("name1", "http://name1.org/") == True)
node.addAttr("noprefix", "mval3")
self.assert_(node.getAttributesLength() == 3)
self.assert_(node.isAttributesEmpty() == False)
self.assert_(("noprefix" != node.getAttrName(2)) == False)
self.assert_(("mval3" != node.getAttrValue(2)) == False)
self.assert_(node.getAttrURI(2) == "")
self.assert_(node.getAttrPrefix(2) == "")
self.assert_(node.hasAttr("noprefix") == True)
self.assert_(node.hasAttr("noprefix", "") == True)
node.addAttr(xt1a, "val1a")
node.addAttr(xt2a, "val2a")
self.assert_(node.getAttributesLength() == 5)
self.assert_(("name1" != node.getAttrName(3)) == False)
self.assert_(("val1a" != node.getAttrValue(3)) == False)
self.assert_(("http://name1a.org/" != node.getAttrURI(3)) == False)
self.assert_(("p1a" != node.getAttrPrefix(3)) == False)
self.assert_(("name2" != node.getAttrName(4)) == False)
self.assert_(("val2a" != node.getAttrValue(4)) == False)
self.assert_(("http://name2a.org/" != node.getAttrURI(4)) == False)
self.assert_(("p2a" != node.getAttrPrefix(4)) == False)
self.assert_(
("val1a" != node.getAttrValue("name1", "http://name1a.org/")
) == False)
self.assert_(
("val2a" != node.getAttrValue("name2", "http://name2a.org/")
) == False)
self.assert_(("val1a" != node.getAttrValue(xt1a)) == False)
self.assert_(("val2a" != node.getAttrValue(xt2a)) == False)
node.removeAttr(xt1a)
node.removeAttr(xt2a)
self.assert_(node.getAttributesLength() == 3)
node.removeAttr("name1", "http://name1.org/")
self.assert_(node.getAttributesLength() == 2)
self.assert_(node.isAttributesEmpty() == False)
self.assert_(("name2" != node.getAttrName(0)) == False)
self.assert_(("mval2" != node.getAttrValue(0)) == False)
self.assert_(("http://name2.org/" != node.getAttrURI(0)) == False)
self.assert_(("p2" != node.getAttrPrefix(0)) == False)
self.assert_(("noprefix" != node.getAttrName(1)) == False)
self.assert_(("mval3" != node.getAttrValue(1)) == False)
self.assert_(node.getAttrURI(1) == "")
self.assert_(node.getAttrPrefix(1) == "")
self.assert_(node.hasAttr("name1", "http://name1.org/") == False)
node.removeAttr(xt2)
self.assert_(node.getAttributesLength() == 1)
self.assert_(node.isAttributesEmpty() == False)
self.assert_(("noprefix" != node.getAttrName(0)) == False)
self.assert_(("mval3" != node.getAttrValue(0)) == False)
self.assert_(node.getAttrURI(0) == "")
self.assert_(node.getAttrPrefix(0) == "")
self.assert_(node.hasAttr(xt2) == False)
self.assert_(node.hasAttr("name2", "http://name2.org/") == False)
node.removeAttr("noprefix")
self.assert_(node.getAttributesLength() == 0)
self.assert_(node.isAttributesEmpty() == True)
self.assert_(node.hasAttr("noprefix") == False)
self.assert_(node.hasAttr("noprefix", "") == False)
_dummyList = [node]
_dummyList[:] = []
del _dummyList
_dummyList = [xt1]
_dummyList[:] = []
del _dummyList
_dummyList = [xt2]
_dummyList[:] = []
del _dummyList
_dummyList = [xt3]
_dummyList[:] = []
del _dummyList
_dummyList = [xt1a]
_dummyList[:] = []
del _dummyList
_dummyList = [xt2a]
_dummyList[:] = []
del _dummyList
_dummyList = [triple]
_dummyList[:] = []
del _dummyList
_dummyList = [attr]
_dummyList[:] = []
del _dummyList
pass
def test_XMLNode_remove(self):
attr = libsbml.XMLAttributes()
trp_p = libsbml.XMLTriple("parent", "", "")
trp_c1 = libsbml.XMLTriple("child1", "", "")
trp_c2 = libsbml.XMLTriple("child2", "", "")
trp_c3 = libsbml.XMLTriple("child3", "", "")
trp_c4 = libsbml.XMLTriple("child4", "", "")
trp_c5 = libsbml.XMLTriple("child5", "", "")
p = libsbml.XMLNode(trp_p, attr)
c1 = libsbml.XMLNode(trp_c1, attr)
c2 = libsbml.XMLNode(trp_c2, attr)
c3 = libsbml.XMLNode(trp_c3, attr)
c4 = libsbml.XMLNode(trp_c4, attr)
c5 = libsbml.XMLNode(trp_c5, attr)
p.addChild(c1)
p.addChild(c2)
p.addChild(c3)
p.addChild(c4)
p.addChild(c5)
r = p.removeChild(5)
self.assert_(r == None)
r = p.removeChild(1)
self.assert_(p.getNumChildren() == 4)
self.assert_(("child2" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(3)
self.assert_(p.getNumChildren() == 3)
self.assert_(("child5" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(0)
self.assert_(p.getNumChildren() == 2)
self.assert_(("child1" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(1)
self.assert_(p.getNumChildren() == 1)
self.assert_(("child4" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(0)
self.assert_(p.getNumChildren() == 0)
self.assert_(("child3" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
p.addChild(c1)
p.addChild(c2)
p.addChild(c3)
p.addChild(c4)
p.addChild(c5)
r = p.removeChild(4)
self.assert_(p.getNumChildren() == 4)
self.assert_(("child5" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(3)
self.assert_(p.getNumChildren() == 3)
self.assert_(("child4" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(2)
self.assert_(p.getNumChildren() == 2)
self.assert_(("child3" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(1)
self.assert_(p.getNumChildren() == 1)
self.assert_(("child2" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(0)
self.assert_(p.getNumChildren() == 0)
self.assert_(("child1" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
p.addChild(c1)
p.addChild(c2)
p.addChild(c3)
p.addChild(c4)
p.addChild(c5)
r = p.removeChild(0)
self.assert_(p.getNumChildren() == 4)
self.assert_(("child1" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(0)
self.assert_(p.getNumChildren() == 3)
self.assert_(("child2" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(0)
self.assert_(p.getNumChildren() == 2)
self.assert_(("child3" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(0)
self.assert_(p.getNumChildren() == 1)
self.assert_(("child4" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(0)
self.assert_(p.getNumChildren() == 0)
self.assert_(("child5" != r.getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
p.addChild(c1)
p.addChild(c2)
p.addChild(c3)
p.addChild(c4)
p.addChild(c5)
r = p.removeChild(0)
self.assert_(("child1" != r.getName()) == False)
p.insertChild(0, r)
self.assert_(p.getNumChildren() == 5)
self.assert_(("child1" != p.getChild(0).getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(1)
self.assert_(("child2" != r.getName()) == False)
p.insertChild(1, r)
self.assert_(p.getNumChildren() == 5)
self.assert_(("child2" != p.getChild(1).getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(2)
self.assert_(("child3" != r.getName()) == False)
p.insertChild(2, r)
self.assert_(p.getNumChildren() == 5)
self.assert_(("child3" != p.getChild(2).getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(3)
self.assert_(("child4" != r.getName()) == False)
p.insertChild(3, r)
self.assert_(p.getNumChildren() == 5)
self.assert_(("child4" != p.getChild(3).getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
r = p.removeChild(4)
self.assert_(("child5" != r.getName()) == False)
p.insertChild(4, r)
self.assert_(p.getNumChildren() == 5)
self.assert_(("child5" != p.getChild(4).getName()) == False)
_dummyList = [r]
_dummyList[:] = []
del _dummyList
_dummyList = [p]
_dummyList[:] = []
del _dummyList
_dummyList = [c1]
_dummyList[:] = []
del _dummyList
_dummyList = [c2]
_dummyList[:] = []
del _dummyList
_dummyList = [c3]
_dummyList[:] = []
del _dummyList
_dummyList = [c4]
_dummyList[:] = []
del _dummyList
_dummyList = [c5]
_dummyList[:] = []
del _dummyList
_dummyList = [attr]
_dummyList[:] = []
del _dummyList
_dummyList = [trp_p]
_dummyList[:] = []
del _dummyList
_dummyList = [trp_c1]
_dummyList[:] = []
del _dummyList
_dummyList = [trp_c2]
_dummyList[:] = []
del _dummyList
_dummyList = [trp_c3]
_dummyList[:] = []
del _dummyList
_dummyList = [trp_c4]
_dummyList[:] = []
del _dummyList
_dummyList = [trp_c5]
_dummyList[:] = []
del _dummyList
pass
def test_XMLNode_createElement(self):
name = "test"
uri = "http://test.org/"
prefix = "p"
text = "text node"
triple = libsbml.XMLTriple(name, uri, prefix)
ns = libsbml.XMLNamespaces()
attr = libsbml.XMLAttributes()
ns.add(uri, prefix)
attr.add("id", "value", uri, prefix)
snode = libsbml.XMLNode(triple, attr, ns)
self.assert_(snode != None)
self.assert_(snode.getNumChildren() == 0)
self.assert_((name != snode.getName()) == False)
self.assert_((prefix != snode.getPrefix()) == False)
self.assert_((uri != snode.getURI()) == False)
self.assert_(snode.isElement() == True)
self.assert_(snode.isStart() == True)
self.assert_(snode.isEnd() == False)
self.assert_(snode.isText() == False)
snode.setEnd()
self.assert_(snode.isEnd() == True)
snode.unsetEnd()
self.assert_(snode.isEnd() == False)
cattr = snode.getAttributes()
self.assert_(cattr != None)
self.assert_(("id" != cattr.getName(0)) == False)
self.assert_(("value" != cattr.getValue(0)) == False)
self.assert_((prefix != cattr.getPrefix(0)) == False)
self.assert_((uri != cattr.getURI(0)) == False)
_dummyList = [triple]
_dummyList[:] = []
del _dummyList
_dummyList = [attr]
_dummyList[:] = []
del _dummyList
_dummyList = [ns]
_dummyList[:] = []
del _dummyList
_dummyList = [snode]
_dummyList[:] = []
del _dummyList
attr = libsbml.XMLAttributes()
attr.add("id", "value")
triple = libsbml.XMLTriple(name, "", "")
snode = libsbml.XMLNode(triple, attr)
self.assert_(snode != None)
self.assert_(snode.getNumChildren() == 0)
self.assert_(("test" != snode.getName()) == False)
self.assert_(snode.getPrefix() == "")
self.assert_(snode.getURI() == "")
self.assert_(snode.isElement() == True)
self.assert_(snode.isStart() == True)
self.assert_(snode.isEnd() == False)
self.assert_(snode.isText() == False)
cattr = snode.getAttributes()
self.assert_(cattr != None)
self.assert_(("id" != cattr.getName(0)) == False)
self.assert_(("value" != cattr.getValue(0)) == False)
self.assert_(cattr.getPrefix(0) == "")
self.assert_(cattr.getURI(0) == "")
enode = libsbml.XMLNode(triple)
self.assert_(enode != None)
self.assert_(enode.getNumChildren() == 0)
self.assert_(("test" != enode.getName()) == False)
self.assert_(enode.getPrefix() == "")
self.assert_(enode.getURI() == "")
self.assert_(enode.isElement() == True)
self.assert_(enode.isStart() == False)
self.assert_(enode.isEnd() == True)
self.assert_(enode.isText() == False)
tnode = libsbml.XMLNode(text)
self.assert_(tnode != None)
self.assert_((text != tnode.getCharacters()) == False)
self.assert_(tnode.getNumChildren() == 0)
self.assert_(tnode.getName() == "")
self.assert_(tnode.getPrefix() == "")
self.assert_(tnode.getURI() == "")
self.assert_(tnode.isElement() == False)
self.assert_(tnode.isStart() == False)
self.assert_(tnode.isEnd() == False)
self.assert_(tnode.isText() == True)
_dummyList = [triple]
_dummyList[:] = []
del _dummyList
_dummyList = [attr]
_dummyList[:] = []
del _dummyList
_dummyList = [snode]
_dummyList[:] = []
del _dummyList
_dummyList = [enode]
_dummyList[:] = []
del _dummyList
_dummyList = [tnode]
_dummyList[:] = []
del _dummyList
pass
