def testReddeningException(self):
"""Test that if reddening=True in matchToObserved CatRA & CatDec are defined or exception is raised"""
testException = selectGalaxySED(galDir = self.testSpecDir)
testSEDList = testException.loadBC03()
magnitudes = [[1.0, 2.0, 3.0, 4.0, 5.0], [1.0, 2.0, 3.0, 4.0, 5.0]]
redshifts = [1.0, 1.0]
self.assertRaises(RuntimeError, testException.matchToObserved, testSEDList, magnitudes, redshifts,
reddening = True)
def testReddeningException(self):
"""Test that if reddening=True in matchToObserved CatRA & CatDec are defined or exception is raised"""
testException = selectGalaxySED(galDir = self.testSpecDir)
testSEDList = testException.loadBC03()
magnitudes = [[1.0, 2.0, 3.0, 4.0, 5.0], [1.0, 2.0, 3.0, 4.0, 5.0]]
redshifts = [1.0, 1.0]
self.assertRaises(RuntimeError, testException.matchToObserved, testSEDList, magnitudes, redshifts,
reddening = True)
def testMatchToRestFrame(self):
"""Test that Galaxies with no effects added into catalog mags are matched correctly."""
rng = np.random.RandomState(42)
galPhot = BandpassDict.loadTotalBandpassesFromFiles()
imSimBand = Bandpass()
imSimBand.imsimBandpass()
testMatching = selectGalaxySED(galDir = self.testSpecDir)
testSEDList = testMatching.loadBC03()
testSEDNames = []
testMags = []
testMagNormList = []
magNormStep = 1
for testSED in testSEDList:
getSEDMags = Sed()
testSEDNames.append(testSED.name)
getSEDMags.setSED(wavelen = testSED.wavelen, flambda = testSED.flambda)
testMagNorm = np.round(rng.uniform(20.0, 22.0), magNormStep)
testMagNormList.append(testMagNorm)
fluxNorm = getSEDMags.calcFluxNorm(testMagNorm, imSimBand)
getSEDMags.multiplyFluxNorm(fluxNorm)
testMags.append(galPhot.magListForSed(getSEDMags))
# Also testing to make sure passing in non-default bandpasses works
# Substitute in nan values to simulate incomplete data.
testMags[0][1] = np.nan
testMags[0][2] = np.nan
testMags[0][4] = np.nan
testMags[1][1] = np.nan
testMatchingResults = testMatching.matchToRestFrame(testSEDList, testMags,
bandpassDict = galPhot)
self.assertEqual(None, testMatchingResults[0][0])
self.assertEqual(testSEDNames[1:], testMatchingResults[0][1:])
self.assertEqual(None, testMatchingResults[1][0])
np.testing.assert_almost_equal(testMagNormList[1:], testMatchingResults[1][1:], decimal = magNormStep)
# Test Match Errors
errMags = np.array((testMags[2], testMags[2], testMags[2], testMags[2]))
errMags[1, 1] += 1. # Total MSE will be 2/(5 colors) = 0.4
errMags[2, 0:2] = np.nan
errMags[2, 3] += 1. # Total MSE will be 2/(3 colors) = 0.667
errMags[3, :] = None
errSED = testSEDList[2]
testMatchingResultsErrors = testMatching.matchToRestFrame([errSED], errMags,
bandpassDict = galPhot)
np.testing.assert_almost_equal(np.array((0.0, 0.4, 2./3.)), testMatchingResultsErrors[2][0:3],
decimal = 3)
self.assertEqual(None, testMatchingResultsErrors[2][3])
def testMatchToRestFrame(self):
"""Test that Galaxies with no effects added into catalog mags are matched correctly."""
np.random.seed(42)
galPhot = BandpassDict.loadTotalBandpassesFromFiles()
imSimBand = Bandpass()
imSimBand.imsimBandpass()
testMatching = selectGalaxySED(galDir = self.testSpecDir)
testSEDList = testMatching.loadBC03()
testSEDNames = []
testMags = []
testMagNormList = []
magNormStep = 1
for testSED in testSEDList:
getSEDMags = Sed()
testSEDNames.append(testSED.name)
getSEDMags.setSED(wavelen = testSED.wavelen, flambda = testSED.flambda)
testMagNorm = np.round(np.random.uniform(20.0,22.0),magNormStep)
testMagNormList.append(testMagNorm)
fluxNorm = getSEDMags.calcFluxNorm(testMagNorm, imSimBand)
getSEDMags.multiplyFluxNorm(fluxNorm)
testMags.append(galPhot.magListForSed(getSEDMags))
#Also testing to make sure passing in non-default bandpasses works
#Substitute in nan values to simulate incomplete data.
testMags[0][1] = np.nan
testMags[0][2] = np.nan
testMags[0][4] = np.nan
testMags[1][1] = np.nan
testMatchingResults = testMatching.matchToRestFrame(testSEDList, testMags,
bandpassDict = galPhot)
self.assertEqual(None, testMatchingResults[0][0])
self.assertEqual(testSEDNames[1:], testMatchingResults[0][1:])
self.assertEqual(None, testMatchingResults[1][0])
np.testing.assert_almost_equal(testMagNormList[1:], testMatchingResults[1][1:], decimal = magNormStep)
#Test Match Errors
errMags = np.array((testMags[2], testMags[2], testMags[2], testMags[2]))
errMags[1,1] += 1. #Total MSE will be 2/(5 colors) = 0.4
errMags[2, 0:2] = np.nan
errMags[2, 3] += 1. #Total MSE will be 2/(3 colors) = 0.667
errMags[3, :] = None
errSED = testSEDList[2]
testMatchingResultsErrors = testMatching.matchToRestFrame([errSED], errMags,
bandpassDict = galPhot)
np.testing.assert_almost_equal(np.array((0.0, 0.4, 2./3.)), testMatchingResultsErrors[2][0:3],
decimal = 3)
self.assertEqual(None, testMatchingResultsErrors[2][3])
def testMatchToObserved(self):
"""Test that Galaxy SEDs with extinction or redshift are matched correctly"""
rng = np.random.RandomState(42)
galPhot = BandpassDict.loadTotalBandpassesFromFiles()
imSimBand = Bandpass()
imSimBand.imsimBandpass()
testMatching = selectGalaxySED(galDir = self.testSpecDir)
testSEDList = testMatching.loadBC03()
testSEDNames = []
testRA = []
testDec = []
testRedshifts = []
testMagNormList = []
magNormStep = 1
extCoeffs = [1.8140, 1.4166, 0.9947, 0.7370, 0.5790, 0.4761]
testMags = []
testMagsRedshift = []
testMagsExt = []
for testSED in testSEDList:
# As a check make sure that it matches when no extinction and no redshift are present
getSEDMags = Sed()
testSEDNames.append(testSED.name)
getSEDMags.setSED(wavelen = testSED.wavelen, flambda = testSED.flambda)
testMags.append(galPhot.magListForSed(getSEDMags))
# Check Extinction corrections
sedRA = rng.uniform(10, 170)
sedDec = rng.uniform(10, 80)
testRA.append(sedRA)
testDec.append(sedDec)
raDec = np.array((sedRA, sedDec)).reshape((2, 1))
ebvVal = ebv().calculateEbv(equatorialCoordinates = raDec)
extVal = ebvVal*extCoeffs
testMagsExt.append(galPhot.magListForSed(getSEDMags) + extVal)
# Setup magnitudes for testing matching to redshifted values
getRedshiftMags = Sed()
testZ = np.round(rng.uniform(1.1, 1.3), 3)
testRedshifts.append(testZ)
testMagNorm = np.round(rng.uniform(20.0, 22.0), magNormStep)
testMagNormList.append(testMagNorm)
getRedshiftMags.setSED(wavelen = testSED.wavelen, flambda = testSED.flambda)
getRedshiftMags.redshiftSED(testZ)
fluxNorm = getRedshiftMags.calcFluxNorm(testMagNorm, imSimBand)
getRedshiftMags.multiplyFluxNorm(fluxNorm)
testMagsRedshift.append(galPhot.magListForSed(getRedshiftMags))
# Will also test in passing of non-default bandpass
testNoExtNoRedshift = testMatching.matchToObserved(testSEDList, testMags, np.zeros(8),
reddening = False,
bandpassDict = galPhot)
testMatchingEbvVals = testMatching.matchToObserved(testSEDList, testMagsExt, np.zeros(8),
catRA = testRA, catDec = testDec,
reddening = True, extCoeffs = extCoeffs,
bandpassDict = galPhot)
# Substitute in nan values to simulate incomplete data and make sure magnorm works too.
testMagsRedshift[0][1] = np.nan
testMagsRedshift[0][3] = np.nan
testMagsRedshift[0][4] = np.nan
testMagsRedshift[1][1] = np.nan
testMatchingRedshift = testMatching.matchToObserved(testSEDList, testMagsRedshift, testRedshifts,
dzAcc = 3, reddening = False,
bandpassDict = galPhot)
self.assertEqual(testSEDNames, testNoExtNoRedshift[0])
self.assertEqual(testSEDNames, testMatchingEbvVals[0])
self.assertEqual(None, testMatchingRedshift[0][0])
self.assertEqual(testSEDNames[1:], testMatchingRedshift[0][1:])
self.assertEqual(None, testMatchingRedshift[1][0])
np.testing.assert_almost_equal(testMagNormList[1:], testMatchingRedshift[1][1:],
decimal = magNormStep)
# Test Match Errors
errMag = testMagsRedshift[2]
errRedshift = testRedshifts[2]
errMags = np.array((errMag, errMag, errMag, errMag))
errRedshifts = np.array((errRedshift, errRedshift, errRedshift, errRedshift))
errMags[1, 1] += 1. # Total MSE will be 2/(5 colors) = 0.4
errMags[2, 0:2] = np.nan
errMags[2, 3] += 1. # Total MSE will be 2/(3 colors) = 0.667
errMags[3, :] = None
errSED = testSEDList[2]
testMatchingResultsErrors = testMatching.matchToObserved([errSED], errMags, errRedshifts,
reddening = False,
bandpassDict = galPhot,
dzAcc = 3)
np.testing.assert_almost_equal(np.array((0.0, 0.4, 2./3.)), testMatchingResultsErrors[2][0:3],
decimal = 2) # Give a little more leeway due to redshifting effects
self.assertEqual(None, testMatchingResultsErrors[2][3])
from lsst.sims.photUtils.selectGalaxySED import selectGalaxySED
import os
import numpy as np
import lsst.utils
from lsst.sims.photUtils.BandpassDict import BandpassDict
#If you are using your own folder this should be selectGalaxySED(galDir = yourFolder)
matchSED = selectGalaxySED()
"""Can restrict the loading below to a subset of the SEDs in a given folder if you pass a list
as matchSED.loadBC03(subset = subsetList)"""
sedList = matchSED.loadBC03()
print sedList[1].wavelen
print sedList[1].flambda
print sedList[1].name
#Import sample galaxy catalog organized as [RA, Dec, z, mag_g, mag_r, mag_i, mag_z, mag_y]
ra, dec, z, mag_g, mag_r, mag_i, mag_z, mag_y = np.genfromtxt('sampleGalCat.dat', unpack=True)
"""Organize magnitudes into single array with each row corresponding to the
set of magnitudes of one object"""
catMagsObs = np.transpose([mag_g, mag_r, mag_i, mag_z, mag_y])
#Define bandpasses. This example shows loading in LSST grizy bandpasses.
galBandpassDict = BandpassDict.loadTotalBandpassesFromFiles(['g', 'r', 'i', 'z', 'y'])
#We'll need to set makeCopy to True since we are going to reuse this sedList below
#matchObservedNames, matchObsMagNorm, matchObsErrors = matchSED.matchToObserved(sedList, catMagsObs, z, catRA=ra, catDec=dec,
# bandpassDict = galBandpassDict, dzAcc=2,extCoeffs = (3.0999999,3.0999999,3.0999999,3.0999999,3.0999999,3.0999999)) #(4.145, 3.237, 2.273, 1.684, 1.323, 1.088))
matchObservedNames, matchObsMagNorm, matchObsErrors = matchSED.matchToObserved(sedList, catMagsObs, z, catRA=ra, catDec=dec, dzAcc = 2,
def testMatchToObserved(self):
"""Test that Galaxy SEDs with extinction or redshift are matched correctly"""
np.random.seed(42)
galPhot = BandpassDict.loadTotalBandpassesFromFiles()
imSimBand = Bandpass()
imSimBand.imsimBandpass()
testMatching = selectGalaxySED(galDir = self.testSpecDir)
testSEDList = testMatching.loadBC03()
testSEDNames = []
testRA = []
testDec = []
testRedshifts = []
testMagNormList = []
magNormStep = 1
extCoeffs = [1.8140, 1.4166, 0.9947, 0.7370, 0.5790, 0.4761]
testMags = []
testMagsRedshift = []
testMagsExt = []
for testSED in testSEDList:
#As a check make sure that it matches when no extinction and no redshift are present
getSEDMags = Sed()
testSEDNames.append(testSED.name)
getSEDMags.setSED(wavelen = testSED.wavelen, flambda = testSED.flambda)
testMags.append(galPhot.magListForSed(getSEDMags))
#Check Extinction corrections
sedRA = np.random.uniform(10,170)
sedDec = np.random.uniform(10,80)
testRA.append(sedRA)
testDec.append(sedDec)
raDec = np.array((sedRA, sedDec)).reshape((2,1))
ebvVal = ebv().calculateEbv(equatorialCoordinates = raDec)
extVal = ebvVal*extCoeffs
testMagsExt.append(galPhot.magListForSed(getSEDMags) + extVal)
#Setup magnitudes for testing matching to redshifted values
getRedshiftMags = Sed()
testZ = np.round(np.random.uniform(1.1,1.3),3)
testRedshifts.append(testZ)
testMagNorm = np.round(np.random.uniform(20.0,22.0),magNormStep)
testMagNormList.append(testMagNorm)
getRedshiftMags.setSED(wavelen = testSED.wavelen, flambda = testSED.flambda)
getRedshiftMags.redshiftSED(testZ)
fluxNorm = getRedshiftMags.calcFluxNorm(testMagNorm, imSimBand)
getRedshiftMags.multiplyFluxNorm(fluxNorm)
testMagsRedshift.append(galPhot.magListForSed(getRedshiftMags))
#Will also test in passing of non-default bandpass
testNoExtNoRedshift = testMatching.matchToObserved(testSEDList, testMags, np.zeros(20),
reddening = False,
bandpassDict = galPhot)
testMatchingEbvVals = testMatching.matchToObserved(testSEDList, testMagsExt, np.zeros(20),
catRA = testRA, catDec = testDec,
reddening = True, extCoeffs = extCoeffs,
bandpassDict = galPhot)
#Substitute in nan values to simulate incomplete data and make sure magnorm works too.
testMagsRedshift[0][1] = np.nan
testMagsRedshift[0][3] = np.nan
testMagsRedshift[0][4] = np.nan
testMagsRedshift[1][1] = np.nan
testMatchingRedshift = testMatching.matchToObserved(testSEDList, testMagsRedshift, testRedshifts,
dzAcc = 3, reddening = False,
bandpassDict = galPhot)
self.assertEqual(testSEDNames, testNoExtNoRedshift[0])
self.assertEqual(testSEDNames, testMatchingEbvVals[0])
self.assertEqual(None, testMatchingRedshift[0][0])
self.assertEqual(testSEDNames[1:], testMatchingRedshift[0][1:])
self.assertEqual(None, testMatchingRedshift[1][0])
np.testing.assert_almost_equal(testMagNormList[1:], testMatchingRedshift[1][1:],
decimal = magNormStep)
#Test Match Errors
errMag = testMagsRedshift[2]
errRedshift = testRedshifts[2]
errMags = np.array((errMag, errMag, errMag, errMag))
errRedshifts = np.array((errRedshift, errRedshift, errRedshift, errRedshift))
errMags[1,1] += 1. #Total MSE will be 2/(5 colors) = 0.4
errMags[2, 0:2] = np.nan
errMags[2, 3] += 1. #Total MSE will be 2/(3 colors) = 0.667
errMags[3, :] = None
errSED = testSEDList[2]
testMatchingResultsErrors = testMatching.matchToObserved([errSED], errMags, errRedshifts,
reddening = False,
bandpassDict = galPhot,
dzAcc = 3)
np.testing.assert_almost_equal(np.array((0.0, 0.4, 2./3.)), testMatchingResultsErrors[2][0:3],
decimal = 2) #Give a little more leeway due to redshifting effects
self.assertEqual(None, testMatchingResultsErrors[2][3])