def inputPage(amrString, errors):
page = markup.page(mode='html')
page.init(lang="en",
charset='utf-8',
doctype=markup.doctype.strict,
title="GoPhiPy: an AMR Verbalizer",
script=('http://code.jquery.com/jquery-latest.min.js',
'../gophi-web/ace/ace.js', '../gophi-web/amr-verb.js'),
css=('../gophi-web/amr-verb.css'))
page.form(action="", method="POST", id='form')
page.h1(
e.a('Γω-Φ-∏', href="https://github.com/rali-udem/gophipy") +
': an AMR verbalizer')
page.p(
'AMR Color coding: ' + e.span('variable', class_='ace_variable') +
", " + e.span('concept', class_='ace_concept') + ", " +
e.span('role', class_='ace_role') + e.span(e.a(
"Editor help",
target="_blank",
href='https://github.com/ajaxorg/ace/wiki/Default-Keyboard-Shortcuts'
) + " " + e.a('Drag bottom border to resize editor', class_='resize'),
class_="help"))
page.div(
e.div("", id="amr", style="height:" + editorHeight + "px") +
e.div("", id="amr_dragbar", class_="app_editor_dragbar"))
page.div(amrString, id="inputAMR", name="amr")
page.textarea("", name="amr")
if len(errors) > 0:
page.pre(e.code(errors))
m = re.match(r"line +(\d+),(\d+) :", errors)
if m != None:
page.script(
'$(document).ready(function() {ace.edit("amr").gotoLine(%s,%s,true);})'
% m.groups())
page.input(id="indent", type="button", value="Indent")
page.input(name="submit", type="submit", value="Verbalize")
page.input(name="editorHeight", type="hidden", value="editorHeigth")
page.fieldset(
e.legend("Show Representations") + e.label("Semantic", for_="semR") +
makeCB("semR") + e.label("Syntactic", for_="syntR") + makeCB("syntR"))
page.input(name="mode", type="hidden", value="reply")
page.form.close()
return page
def html_continue_test(results):
if len(results)==1 and type(results[0]) is ErrorResult:
test_error()
html_error(results[0])
else:
passed = 0
result_str = ""
for result in results:
if result.result:
test_passed()
result_str += "{0}<br />\n".format(nest.span(str(result),style="color:00FF00"))
else:
test_failed()
result_str += "{0}<br />\n".format(nest.span(str(result),style="color:#FF0000"))
if test_stats.passed==test_stats.total:
html_passed()
else:
html_failed()
body = "{0}{1}\nAsserts: {2}{1}\nPassed: {3}{1}\nFailed: {4}{1}\nPercentage passed: {5:.2%}".format(result_str,nest.br(),test_stats.total,test_stats.passed,test_stats.failed,test_stats.passed/float(test_stats.total))
html_report.p(body,style="margin:0px")
def html_error(result=None):
body = nest.span(nest.strong("ERROR"),style="font-size:16px")
if result:
body += "<br />\n{0}".format(str(result).replace('\n',"<br />\n"))
html_report.p(body,style="color:#0000FF; margin:0px")
def html_failed(result=None):
body = nest.span(nest.strong("FAILED"),style="font-size:16px")
if result:
body += "<br />\n{0}".format(result)
html_report.p(body,style="color:#FF0000; margin:0px")
def populateHTML(page, pieces, indVarList, depVarList, constsList,
indVarDef, depVarDef, constsDef, depthLimit):
# Check max recursive depth first
if depthLimit > RECURSIVE_DEPTH_LIMIT:
print ("Error: Maximum Recursive Depth Exceeded.")
sys.exit()
for item in pieces:
var_string = item[1:-1]
if item in indVarList:
for ind in indVarDef:
if ind[VAR_IDENT] == var_string:
if ind["class_"] == "TKAdjustableNumber":
page.span(ind['display_text'],
data_var=ind['data_var'],
class_=ind['class_'],
data_min=ind['data_min'],
data_max=ind['data_max'],
data_step=ind['data_step'])
elif ind["class_"] == "TKToggle TKSwitch":
# Collect text options
text_options = extractDisplayValues(ind['data_values'])
nested_spans = [e.span(i) for i in text_options]
nested_spans_text = str(" ".join(nested_spans))
page.span(nested_spans_text,
data_var=ind['data_var'],
class_=ind['class_']
)
elif item in depVarList:
for dep in depVarDef:
if dep[VAR_IDENT] == var_string:
if "class_" in dep and dep['class_'] == "TKSwitchPositiveNegative":
nested_spans = e.span(dep["positive"]), e.span(dep["negative"])
nested_spans_text = str(" ").join(nested_spans)
page.span(nested_spans_text,
data_var=dep['backing_variable'],
class_=dep['class_'])
elif "class_" in dep and dep['class_'] == "TKSwitch":
#Need to add a case for text and not programs I'm not checking right now
# Recursive call for each object in list?
nested_spans = []
for textSnippet in dep['options']:
subPage = markup.page()
new_pieces, new_ind_var, new_dep_var, new_consts = processText(textSnippet)
subPage = populateHTML(subPage, new_pieces, new_ind_var, new_dep_var, new_consts,
indVarDef, depVarDef, constsDef, depthLimit-1)
nested_spans.append(e.span(str(subPage)))
nested_spans_text = str(" ").join(nested_spans)
page.span(nested_spans_text,
data_var=dep['data_var'],
class_=dep['class_'])
else:
page.span("",
data_var=dep['data_var'],
data_format=dep['data_format'])
elif item in constsList:
var_string = item[1:-1]
for const in constsDef:
if const[VAR_IDENT] == var_string:
page.span("",
data_var=const["data_var"],
data_format=const["data_format"])
else:
page.add(item)
return page
def main(initfile, ntop):
# read configuration options and process
par = Parameters(initfile)
gpsb = par.res_param['gpsb']
gpse = par.res_param['gpse']
pdir = par.res_param['pdir']
hdir = par.res_param['hdir']
data = Data(hdir + 'post_proc_data.dat')
# relative paths of the stilesheets and javascripts for the results page
stylesheets = ('general.css', 'table.css', 'modal.css')
script = 'scripts.js'
# copy them in the results folder (that should already exist)
for sheet in stylesheets:
copy2(os.path.dirname(os.path.abspath(__file__)) + '/' + sheet, hdir)
copy2(os.path.dirname(os.path.abspath(__file__)) + '/' + script, hdir)
# Create summary web page
print "Generating Web Page..."
page = markup.page()
page.init(title="NonStatMoni",
css=stylesheets,
footer="(2017)" +
ol.a("Michele Valentini", href='mailto:[email protected]'))
# best coherences and ccfs summary table generation
page.button("Auxillary channels summary table", class_="accordion")
page.div(class_="panel")
page.input(type="text",
id="myInput",
onkeyup="myFunction()",
placeholder="Search for aux_channel names..")
page.table(id="t01")
for aux_name, aux_groups in data.aux_dict.iteritems():
page.tr()
page.td()
page.h4(aux_name)
page.td.close()
# Sort the dictionary according to the abs of the values,
# from highest to lowest
ccf_sorted = OrderedDict(
sorted(data.ccfs[aux_name].iteritems(),
key=lambda x: abs(x[1]),
reverse=True))
mean_coh_sorted = OrderedDict(
sorted(data.mean_cohs[aux_name].iteritems(),
key=lambda x: x[1],
reverse=True))
for chan_band, ccf in ccf_sorted.items()[0:4]:
pagename = 'cohe_{}.html'.format(chan_band.split('_')[0])
page.td(style="width:10%; font-size :11px;")
page.add(
"<a target=_blank href={}#{}>{}</a><br>(ccf={:3f})".format(
pagename,
aux_name.split(':')[1], chan_band, ccf))
page.td.close()
page.td()
page.add('<a> ******** </a>')
page.td.close()
for chan_band, coh in mean_coh_sorted.items()[0:4]:
pagename = 'cohe_{}.html'.format(chan_band.split('_')[0])
page.td(style="width:10%; font-size:11px;")
page.add(
'<a target=_blank href={}#{}>{}</a><br>(mncoh={:3f})'.format(
pagename,
aux_name.split(':')[1], chan_band, coh))
page.td.close()
page.tr.close()
page.table.close()
page.div.close()
# build the page menu
onclick_gen = ("openGroup(event, '{}')".format(group)
for group in data.group_dict.keys())
page.div(ol.button(data.group_dict.keys(),
class_='tablinks',
onclick=onclick_gen),
class_='tab')
# build each group subpage
for group, g_dict in data.group_dict.iteritems():
# Build the highest ccf and coherence for this group table
ccftab = {group: np.zeros(ntop)}
cohtab = {group: np.zeros(ntop)}
ccftab_names = {group: np.zeros(ntop, dtype='string')}
cohtab_names = {group: np.zeros(ntop, dtype='string')}
cohe_page_name = 'cohe_{}.html'.format(group)
for aux_n, (aux_name,
aux_groups) in enumerate(data.aux_dict.iteritems()):
if group in aux_groups:
for band in g_dict['band_list']:
if aux_n == 0:
ccftab[band] = np.zeros(ntop)
cohtab[band] = np.zeros(ntop)
ccftab_names[band] = np.zeros(ntop, dtype='string')
cohtab_names[band] = np.zeros(ntop, dtype='string')
ccf = data.ccfs[aux_name][group + '_' + band]
coh = data.mean_cohs[aux_name][group + '_' + band]
# todo: build single band tables too
if abs(ccf) > min(np.abs(ccftab[band])):
ccftab[band] = np.concatenate((ccftab[band], [ccf]))
ccftab_names[band] = np.concatenate(
(ccftab_names[band], [aux_name]))
best_indexes = np.abs(ccftab[band]).argsort()[1:][::-1]
ccftab[band] = ccftab[band][best_indexes]
ccftab_names[band] = ccftab_names[band][best_indexes]
if coh > min(cohtab[band]):
cohtab[band] = np.concatenate((cohtab[band], [coh]))
cohtab_names[band] = np.concatenate(
(cohtab_names[band], [aux_name]))
best_indexes = cohtab[band].argsort()[1:][::-1]
cohtab[band] = cohtab[band][best_indexes]
cohtab_names[band] = cohtab_names[band][best_indexes]
# Build the full group best tabs
if abs(ccf) > min(np.abs(ccftab[group])):
ccftab[group] = np.concatenate((ccftab[group], [ccf]))
ccftab_names[group] = np.concatenate(
(ccftab_names[group], [aux_name + ' with ' + band
]))
best_indexes = np.abs(
ccftab[group]).argsort()[1:][::-1]
ccftab[group] = ccftab[group][best_indexes]
ccftab_names[group] = ccftab_names[group][best_indexes]
if coh > min(cohtab[group]):
cohtab[group] = np.concatenate((cohtab[group], [coh]))
cohtab_names[group] = np.concatenate(
(cohtab_names[group], [aux_name + ' with ' + band
]))
best_indexes = cohtab[group].argsort()[1:][::-1]
cohtab[group] = cohtab[group][best_indexes]
cohtab_names[group] = cohtab_names[group][best_indexes]
tab = [[" CCF ", "Coherence"]]
for i in xrange(ntop):
row = [
"<a target=_blank href={0}#{1}>{2}</a><br>CCFs = {3:.2f}".
format(cohe_page_name,
ccftab_names[group][i].split(' ')[0].split(':')[1],
ccftab_names[group][i], ccftab[group][i]),
"<a target=_blank href={0}#{1}>{2}</a>"
"<br>Mean Coher. = {3:.3f}".format(
cohe_page_name,
cohtab_names[group][i].split(' ')[0].split(':')[1],
cohtab_names[group][i], cohtab[group][i])
]
tab.append(row)
tab_str = OrderedDict({group: tb.tabmaker(tab, True, False)})
for band in g_dict['band_list']:
tab = [[" CCF ", "Coherence"]]
for i in xrange(ntop):
row = [
"<a target=_blank href={0}#{1}>{2}</a><br>CCFs = {3:.2f}".
format(cohe_page_name, ccftab_names[band][i].split(':')[1],
ccftab_names[band][i], ccftab[band][i]),
"<a target=_blank href={0}#{1}>{2}</a>"
"<br>Mean Coher. = {3:.3f}".format(
cohe_page_name, cohtab_names[band][i].split(':')[1],
cohtab_names[band][i], cohtab[band][i])
]
tab.append(row)
tab_str[band] = tb.tabmaker(tab, True, False)
# build the rest of the frame
frame = ol.div(
ol.h1("NonStatMoni BRMS for {} GPS {:d} - {:d}".format(
g_dict['channel'], gpsb, gpse),
style="display:inline") +
ol.h3(ol.a("Coherences with slow channels",
target='_blank',
href=cohe_page_name),
style="display:inline"))
# todo: normalized by what?
time_title = ol.h2("Normalized BRMS time series")
time_img = ol.img(class_="myImg",
src=pdir + group + "_time.png",
alt=group + "Time plot",
width="400")
spec_title = ol.h2("Spectrum of BRMS time series")
spec_img = ol.img(class_="myImg",
src=pdir + group + "_psd.png",
alt=group + "PSD plot",
width="400")
frame += ol.div(time_title + time_img + spec_title + spec_img,
style="float:left")
tab_title_gen = (ol.h2("Best Correlations"
" and best Coherences for {}".format(c))
for c in ([group] + g_dict['band_list']))
frame += ol.div(
(title + tbl
for title, tbl in zip(tab_title_gen, tab_str.values())),
class_="v_tabcontent",
id=(['v_' + group] + g_dict['band_list']))
onclick_gen = ("openBand(event, '{}')".format(band)
for band in (['v_' + group] + g_dict['band_list']))
frame += ol.div(ol.button([group] + g_dict['band_list'],
class_='v_tablinks',
onclick=onclick_gen,
id=['defaultOpen', '']),
class_='vertical_tab')
page.div(frame, id=group, class_='tabcontent')
# create coherence subpage
page2 = markup.page()
page2.init(title="NonStatMoni", css='../style/style.css')
page2.h1("Coherences with slow channels")
for aux_name, aux_groups in data.aux_dict.iteritems():
if group in aux_groups:
page2.div(ol.img(src=(pdir + group + '_' + 'cohe_' +
aux_name.split(':')[1] + '.png'),
alt=(" No plots for" + aux_name)),
id=aux_name.split(':')[1])
page2.savehtml(hdir + cohe_page_name)
# create the modal for the plot images
modal = ol.span("×", class_="close")
modal += ol.img(class_="modal-content", id="img01")
modal += ol.div('', id="caption")
page.div(modal, id='myModal', class_="modal")
page.br()
page.h2("Contacts")
page.scripts({script: 'javascript'})
page.savehtml(hdir + 'index.html')
