def test_basic_network_where_neighbor_of_citations_merges_enabled(self): net = NiceCXNetwork() adjud = RedundantEdgeAdjudicator() edge_map = {} nid = net.create_edge(edge_source=0, edge_target=1, edge_interaction='neighbor-of') net.set_edge_attribute(nid, RedundantEdgeAdjudicator.CITATION, ['pubmed:5'], type='list_of_string') cid = net.create_edge(edge_source=0, edge_target=1, edge_interaction='controls-state-change-of') net.set_edge_attribute(cid, RedundantEdgeAdjudicator.CITATION, ['pubmed:6'], type='list_of_string') neighbor_of_map = {} controls_state_change_map = {} other_edge_exists = {} for k, v in net.get_edges(): s = v['s'] t = v['t'] i = v['i'] if i == 'neighbor-of': if not s in neighbor_of_map: neighbor_of_map[s] = {} if not t in neighbor_of_map: neighbor_of_map[t] = {} neighbor_of_map[s][t] = k neighbor_of_map[t][s] = k elif i == 'controls-state-change-of': adjud._add_to_edge_map(controls_state_change_map, k, s, t) else: adjud._add_to_edge_map(other_edge_exists, k, s, t) adjud.remove_and_merge_neighbor_of(net, neighbor_of_map, edge_map) net.print_summary()
cx_network.add_node_attribute(property_of=cx_node, name="HEIGHT", values=height) # TODO: need to handle defaults. The following doesn't appear to work. # node_properties = [ # {"properties_of": "nodes:default", "properties": {"NODE_SHAPE": "RECTANGLE"}} # ] # set_visual_properties_aspect(cx_network, node_properties) style_network = ndex2.create_nice_cx_from_file("./WP4571.cx.json") cx_network.apply_style_from_network(style_network) set_cartesian_layout_aspect(cx_network, cartesianLayout) cx_network.print_summary() mycx = cx_network.to_cx() # print(mycx) pprint.pprint(mycx, depth=4) # result = cx_network.upload_to( # server="http://test.ndexbio.org", username=NDEX_USER, password=NDEX_PWD # ) result = cx_network.update_to( server="http://test.ndexbio.org", username=NDEX_USER, password=NDEX_PWD, uuid="99698d91-9155-11e9-b7e4-0660b7976219", )